Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq898 116 4e-21 seq150 107 2e-18 seq1443 96.9 4e-15 seq39 89.7 6e-13 >seq898 Length=32307 Score = 116 bits (128), Expect = 4e-21 Identities = 335/505 (66%), Gaps = 18/505 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||| |||| |||||||||||||| || | || || | ||||| Sbjct 19504 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 19445 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| ||||| ||||| |||| | || | ||| |||| | || || ||||| Sbjct 19444 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCAGACG 19386 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 19385 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 19326 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| ||| |||| | | |||||||| || || || |||||| |||| Sbjct 19325 CGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTG 19266 Query 117225 GA-TAGTTTC---GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 || | | || || || || | || || |||| || | | | || | Sbjct 19265 GACTCGGCTCTCCGGCAGCTTGT---TCACC---AG-CTTGGAGTACATGAGGCATGCGA 19213 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || || || | || || ||||||| || || |||| Sbjct 19212 AATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCA 19153 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 |||| || |||||||| | ||| | | | ||| || || || ||||||||||| |||| Sbjct 19152 TGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCT 19093 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 |||| | |||||||| | || ||||| | | |||| ||| || | ||| |||| Sbjct 19092 CCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGGGTCGCACCAC 19034 Query 117457 TTCATTGCCCATTTCGCCTTCTTCT 117481 || | |||||| || || ||||||| Sbjct 19033 TTGAGTGCCCAGTTGGCTTTCTTCT 19009 >seq150 Length=92316 Score = 107 bits (118), Expect = 2e-18 Identities = 303/456 (66%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 91745 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 91686 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| ||||| | || | ||| |||| | || || || || Sbjct 91685 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTAC-AGCAGGCG 91627 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||| | | |||| | | |||||||||||||| | | | || Sbjct 91626 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCA-ACTCCA 91568 Query 117165 T-GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || ||| || ||| Sbjct 91567 CCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGT 91508 Query 117224 GGATAG----TTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | || ||| || || || | || | | | ||| || | | || Sbjct 91507 GCACGCGGCTTTCCGGCAGCTTGTTGATCA-GCTTGGAGTACATGAGG--CAAG-CGAAG 91452 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| | ||||| || ||| || || ||||| ||||||| || || |||||| Sbjct 91451 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 91392 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | |||| |||||| || || ||||||||||| |||||| Sbjct 91391 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 91332 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || ||||| || | || ||||| | | ||||| Sbjct 91331 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG 91296 >seq1443 Length=13085 Score = 96.9 bits (106), Expect = 4e-15 Identities = 279/427 (65%), Gaps = 27/427 (6%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| || ||||| ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 7979 GATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTT 8038 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301 ||| |||| | || || | || ||| | | |||||||||||||| || Sbjct 8039 CGTGCCGGCAAGCACCACCACGCCC---TCACTCGAGTTGAAACCATCCATCTCGACCAG 8095 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTG--C 9357 || ||||| | || | ||| || || || || |||||| || | | | Sbjct 8096 CAGCTGGTTCAGCGTGTTTTCACGCTCGTCGTT---------ACCACCCGAGAAGTTACC 8146 Query 9358 GTTGCT---TTC-----CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT 9409 ||||| | | |||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 8147 CTTGCTACGTGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATT 8206 Query 9410 TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 | | ||||| | || ||||| || || | | ||||| || || |||||||| Sbjct 8207 TGCACGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTC 8266 Query 9470 CACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9529 | || | || | ||||| || ||| || || ||| ||||| || |||| Sbjct 8267 GATGAAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTT 8326 Query 9530 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTT 9589 || || ||||||||||| ||||| ||| ||| |||| || |||||| || ||||| Sbjct 8327 CGCCAGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTT 8386 Query 9590 GGCGCCA 9596 ||| ||| Sbjct 8387 GGCACCA 8393 >seq39 Length=83206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 260/391 (66%), Gaps = 36/391 (9%) Strand=Plus/Minus Query 169152 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 169211 |||||||||| ||| || | || | | ||||||||||||||| |||||| | ||| Sbjct 2496 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 2437 Query 169212 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTGGTAGTCTT-- 169269 ||||| ||| ||||| || | || ||||| || | |||||||| || Sbjct 2436 TGATCTGCCATGATCATCAGGTGCCCGTAGCGCAGGCC--------CTTGGTAGACTCGT 2385 Query 169270 -TTCCTTG------TTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTT 169319 || || | |||| | |||||| |||||| |||| ||| ||||| ||| Sbjct 2384 ATTTCTGGCCGTACTTGAGG--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTC 2329 Query 169320 -----GATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAG 169374 ||| || | |||| ||| || || || || || || || || |||| Sbjct 2328 TTCACGATTTGTG-TGTG--ACTT--GCTTCACGAACGTTGAGCATTTTACCTCGCAGAG 2274 Query 169375 GAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCG 169434 | ||||||||||||| ||| | ||||| |||| ||||| | || |||| ||||| | Sbjct 2273 GGAAGACGCCATAGTAATCTCTGCCAACAACGGCAAGACCACCCACGGCAACCGTTTTGG 2214 Query 169435 CTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGAT-TGCGCCGTACCCGCCTTG 169493 | ||||| || ||||| | ||| || || || | | | | | ||| || || || || Sbjct 2213 CGGAATCTCCTTCCGTAAGAATCAGAGTGCA-ATCCTTGCTCTTCGCGGTGCCAGCGTTA 2155 Query 169494 TTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 || || || |||| |||||| ||||| |||| Sbjct 2154 TTGGCATCATCCAGCTTGGGGATACCGGTAA 2124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589949671138040