Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1255 432 7e-116 seq150 248 2e-60 seq898 244 2e-59 >seq1255 Length=9666 Score = 432 bits (478), Expect = 7e-116 Identities = 1217/1842 (66%), Gaps = 90/1842 (5%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| |||| ||| | |||||| | || || || Sbjct 1533 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTT- 1591 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGG 212714 ||| ||| || |||| | |||| | ||| || |||||||||||| Sbjct 1592 ----GCT-AATGGTCGGGTCGGCAATGTGG---------ATGTTGAGCGACTGACTCTGG 1637 Query 212715 TCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCAC 212774 ||| | | | | |||||| | || ||| | | | |||| || ||||||| Sbjct 1638 CAAATGTAGGCACCACGGTCAGCAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCAC 1697 Query 212775 ACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCC 212834 || |||||| | | || |||| || || |||| | | |||||||| || || Sbjct 1698 ACCGTCTTGTACTTGTCCTTGACGTTGTCAGGGATGGATTTCACCTTCTGCACGGAACCA 1757 Query 212835 CTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAG 212890 | || | |||| ||| ||||| || |||||| |||| | || ||| Sbjct 1758 CCGTC---GTTCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCA-GCTCGATCAG 1813 Query 212891 GCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTA 212950 | | | ||||| ||| || ||| ||| ||||| | ||||| | | | ||| Sbjct 1814 CTCCCTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTA 1873 Query 212951 AAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGC 213010 | ||| || ||||| ||||||||| ||| ||||| ||||| ||||| ||||| || Sbjct 1874 CATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGC 1933 Query 213011 TGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGC 213068 || |||||||| |||||||| || ||||| | |||||| | || | | | | Sbjct 1934 CGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTTTA---ATCACGTTCTC 1990 Query 213069 CGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | ||| | ||||||| ||| ||||| | | | | | | | ||||||||| Sbjct 1991 CTTCAGCGCAGCCCAGTTCCA-----CAGACCCGACGAAGGCGTG-ATGCCCCACATGTC 2044 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| ||||| || ||||| | || |||||| | | ||| |||||| |||| Sbjct 2045 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTC 2104 Query 213188 CTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCT 213247 |||||| | ||| |||| || || || ||||||||||||||| || || || | | | Sbjct 2105 CTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCAT 2164 Query 213248 GTTGAGCTTCTTGGCCT-CTGG-----GGACGTGAAGGGCATCATCATGCGTTGGAACAC 213301 |||||||| |||| || | | ||| | || ||||| ||| ||| | Sbjct 2165 GTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTTCATCAGAATG------AACGC 2218 Query 213302 ATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGC 213360 || ||||| ||||| || ||||| || | || | ||| | || ||| |||||| | || Sbjct 2219 GTCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGC 2278 Query 213361 ACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTT 213420 |||| ||| |||||| ||||| || || | |||||||||||||||||| |||| | Sbjct 2279 -CTCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCT 2337 Query 213421 TGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAG 213480 | || | | ||| | || || |||||||| | || |||| ||| |||| | Sbjct 2338 TTACCACCTCGTACAGCTTCTGGTAGTTGAACACACCGTCC---TCCTCCACGAACTTGG 2394 Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATG 213539 ||||||| | ||||||||||| || |||||||| | | | | | |||||||||||| Sbjct 2395 GCAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGAC-GTGTACTCCATG 2453 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | |||| ||||| |||||| | |||||||||||||||||||| ||||| ||||| | Sbjct 2454 ACCTCGCAGCACAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGG 2513 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||||| | |||||||| |||||| |||| ||| ||||| | ||||| |||| || Sbjct 2514 TTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATG 2573 Query 213660 TGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTA 213718 | ||| || | | ||| || | | || | | |||| | | | |||||| Sbjct 2574 GCGAACCACAGCTGCTGGGCGTT----AATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTA 2629 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 || |||||||| | | || |||| |||||| | || |||||| ||| | | | Sbjct 2630 CTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGA---GCTTC 2686 Query 213779 ---GGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 ||| || | |||||||| | || | ||| ||| |||| |||||| || || | Sbjct 2687 GTTGGGGCAGAACAGGCTCCATTTGCCATTGGACTC-GACCCTCTTCATGAAGAGATCGG 2745 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTT 213891 ||||||| |||||| ||||||||| | | || | ||||| || ||| | Sbjct 2746 GGACCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCTCGT---TGCCGTGGTTCT 2802 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 |||| || || || || || || | ||| |||||||||||||||| ||||||||| || | Sbjct 2803 TGCGGAGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACG 2862 Query 213952 CGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 |||| | ||| ||||||||||||||| | ||| |||||| | ||||| Sbjct 2863 AGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCA 2922 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | ||| | | ||| |||||| ||||| || || || || | || ||| | Sbjct 2923 GCATGGGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGC 2982 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | |||| |||| || || ||||| ||||| |||||||||| ||||| || Sbjct 2983 GGATGTTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCT 3042 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188 | | || || |||||| | ||| ||| || | | ||||| |||||| || Sbjct 3043 TGAGCGTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACG 3102 Query 214189 AGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACT 214248 | ||||| || | | || ||| | |||||| ||||||||| | || || | | |||| Sbjct 3103 ACAGCTGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACT 3162 Query 214249 TGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTA 214308 | | | |||| ||| ||||| || | | |||||||| ||||||||| | Sbjct 3163 TCTGGCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCA 3222 Query 214309 GAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCT----- 214362 | || ||| | ||| | ||| ||||| |||| ||| | |||| |||| Sbjct 3223 GCGC-CACGCGCATGATCATCTGCTGCGGCCGCTCCA--CCACCTT----CCCCTGCACG 3275 Query 214363 -TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 || |||||| |||||| || |||||||| || |||||| Sbjct 3276 CGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAG 3317 >seq150 Length=92316 Score = 248 bits (274), Expect = 2e-60 Identities = 561/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 91746 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 91687 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | || ||||| | | ||||||| | Sbjct 91686 CCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCG 91627 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||||| ||||||| |||||| || || | ||| Sbjct 91626 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCAC 91567 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | |||||||| | Sbjct 91566 CGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGTG 91507 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| || | | |||||| ||| ||||| || | | ||| || ||||| Sbjct 91506 CACGCGGCTTTCCGGCAGCTTGTTGATCAG---CTTGGAGTACATGAGGCAAGCGAAGTC 91450 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||| ||||| |||||||||||| | || ||||||| |||||| ||||||| Sbjct 91449 GGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATGAG 91390 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||||||||| |||||||| Sbjct 91389 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCCAC 91330 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || || || || || | ||| | | || | | | ||| | ||| Sbjct 91329 GGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTC---GCACCACCT 91273 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| || |||||| ||| ||| || || ||||| ||||| || | || | Sbjct 91272 GAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGGTG 91213 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 | ||| | ||||| | || || | |||||||| | ||| | ||| || Sbjct 91212 GTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCTCCGA 91156 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| ||||||||| | ||||| ||||||||| Sbjct 91155 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCAC 91096 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || ||| || ||| ||||| || || || || || ||||||||||| Sbjct 91095 TTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAA 91036 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 || || || || || | ||| || |||||||||| ||||| |||| | | | Sbjct 91035 AGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAGGTTCGCCCAGTCATTGAG 90976 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | ||| ||| | || || | ||||||||||| || || || |||||||| Sbjct 90975 GTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACAT 90916 >seq898 Length=32307 Score = 244 bits (270), Expect = 2e-59 Identities = 565/844 (67%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 19505 GTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 19446 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || |||| | | |||||| | Sbjct 19445 CCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACG 19386 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| || ||||||||| || || ||| Sbjct 19385 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 19326 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||| | ||| |||| ||| || || | ||| |||| | Sbjct 19325 CGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTG 19266 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || ||| ||| | | ||||| ||| ||||| || | | ||| || || || Sbjct 19265 GACTCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCATGCGAAATC 19209 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| || ||||| | | |||| ||||||| ||| |||||||||| Sbjct 19208 CGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATGAG 19149 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| | | || |||| |||| ||||||||||||||||||| Sbjct 19148 GCCGCGCTTCTTGAGCCAGAAGACCGA-GCAAAAGGAGCCCGAGAAGAAGATGCCCTCCA 19090 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGG 48317 | | || ||||| || | ||| | | || | | | ||| | ||| Sbjct 19089 CCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACACGCGGGTC---GCACCACT 19033 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGA 48374 || ||||||| || ||||||| || ||| || ||||| || || || | ||| | Sbjct 19032 TGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGT 18973 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | ||||| ||| | | |||| | || || | |||||||| | ||| | || Sbjct 18972 GGTTCTT---CTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCT 18919 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||| | ||||| ||| | Sbjct 18918 CCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGCACTT 18859 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||||||| || ||| || ||||||||||||||| || || || ||||| | Sbjct 18858 GCACTTCGTTGCTGAAGTTCATGGCCAGATTCTCATTGACGATGCCGTCACTGGCAGCGA 18799 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || || || || | ||| ||||||||||||| ||||| |||| | | Sbjct 18798 AGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGCTTCGCCCAGTCGT 18739 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||| | ||||||| | || || | ||||||||||| || || || |||| Sbjct 18738 TGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGT 18679 Query 48672 ACAT 48675 |||| Sbjct 18678 ACAT 18675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931483650000640