Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1255 255 1e-62 seq150 230 4e-55 seq898 168 1e-36 >seq1255 Length=9666 Score = 255 bits (282), Expect = 1e-62 Identities = 717/1087 (66%), Gaps = 38/1087 (3%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGC--CTCGGG 221475 || || ||||| |||||||||||| ||||| || ||||||| || | | | |||| Sbjct 2129 CATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCTCACGAGCCTGCTCGCT 2188 Query 221476 A--GAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| | | || ||| ||| || ||| | |||||||||| ||||| || ||||| Sbjct 2189 CTCGAACGCGTAGTTCAT---CAGAAT--GAACG-CGTCGGCCAGACCCTGCACACCGAT 2242 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 || | || | ||| | | ||||||| | ||| || | |||||| || ||||||| Sbjct 2243 CCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAGTAGTTGAC 2302 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || |||| ||||||||||| | || | || || ||||||||| ||||||||||| Sbjct 2303 ATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCACCTCGTACAGCTTCTGGTA 2362 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 ||||||| | ||||| | ||||| || | ||||| || Sbjct 2363 GTTGAACA---------CACCGTCCT------CCTCCACGAACTTGGGCAGGGCCACCGA 2407 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||||| ||||| |||||||| || || |||| |||| ||| || | Sbjct 2408 CGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCGCAGCACAA 2467 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||||| | |||||| ||||||| | || || |||||||| ||||| |||||||| Sbjct 2468 GTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTT 2527 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| ||||| | || ||||| | ||| || |||| || | ||| || | Sbjct 2528 GTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCACAGCTG 2587 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 |||| | | ||| | | | ||||| |||| | | | || ||||| Sbjct 2588 CTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCG---TAGAGGGC 2644 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||||| || || | ||||| ||| || ||| | ||| || | ||| || Sbjct 2645 CTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGGCT 2704 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| | ||| | |||||||| ||||||||| || |||| ||| ||||| | || Sbjct 2705 CCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAGAA 2764 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || || | | ||| ||| ||| ||||| ||| || | || |||| ||||| || Sbjct 2765 CAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAACTCGAA 2824 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | ||| ||||||||||||||||| |||| ||| | | ||| |||||| ||| || Sbjct 2825 CACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCC 2884 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||| ||||| | | || ||||||| | ||| || | || | | || ||||| Sbjct 2885 CTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGA 2944 Query 222253 TCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAGACAT 222309 ||| ||||| ||||| ||||| | ||| | | || | | || | || Sbjct 2945 -CGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTG--AT 3001 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| ||||| |||||| ||||| |||||| Sbjct 3002 GCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 3061 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||| |||| | | |||||| || || ||||||| ||| | | | Sbjct 3062 CTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGT 3121 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG-ACATCAGATCGT 222488 | |||||| || |||||||| | ||||| || ||| | | || | ||| || |||| Sbjct 3122 GCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAG-AACTTCTGGCTCATGAGCTCGT 3180 Query 222489 ACGTCTC 222495 ||||||| Sbjct 3181 ACGTCTC 3187 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 221063 CGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACC 221122 |||| ||| |||||| | ||| ||| |||| || | | || || ||||||||| Sbjct 1779 CGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCACG 1838 Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 | ||| || || | ||||| | | | ||||| ||| || ||| |||| |||||| Sbjct 1839 ATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTACGGCTCGATG 1898 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| |||||||||||||||||||| || || || |||||||| |||||||| || Sbjct 1899 GACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAGC 1958 Query 221243 CTGTTGCGCAGTCCG 221257 ||| || | |||| Sbjct 1959 GAGTTCCGAATTCCG 1973 >seq150 Length=92316 Score = 230 bits (254), Expect = 4e-55 Identities = 561/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || ||| Sbjct 90910 TGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTCGACTTGGTG 90969 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | || |||||| || || ||||| ||||| Sbjct 90970 CACGACCTCAATGACTGGGCGAACCTCACGAACAACGAGCGTCACTTCATCAAGCACGTG 91029 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| |||||||| ||| || ||||| ||||||||||| ||| | || |||| | Sbjct 91030 CTGGCTTTCTTTGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGC 91089 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| |||||| || |||||||| |||||||| |||||||| || Sbjct 91090 AATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAAC 91149 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||| || | ||| || || |||||||| | |||| | |||| Sbjct 91150 ATCCACTCGGAGGTCTA---CTCGCTGCTCATTGACACGTACATCAAGGACGGTGTCGAG 91206 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | ||||||||||| ||| || || ||| || ||| || | ||| Sbjct 91207 AAGGACCACCTGCTGCGTGCCATCGAGACCATCCCGTGCGTCACGAAGAAAGCTCACTGG 91266 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | | |||| | | | || | | || | | ||||| ||| | |||||||| Sbjct 91267 GCGCTCAGGTGGTGCGACCCGCGTGTGTCCT-CCTACCCGGAGCGTCTGCTGGCCTTTGC 91325 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 || |||||||| ||||| ||| || || || ||| | ||||||||||||||| || Sbjct 91326 CGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-TCTATCTTCTGGCTCAAGAAGC 91384 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||||||| || ||| || || |||||||||||| | |||||||| | | Sbjct 91385 GCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCATCAGCCGTGACGAGGGCATGC 91444 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || || ||||| | ||| | | | || || || || || | | || Sbjct 91445 ACACCGACTTCGCTTGCCTCATGTACTC---CAAGCTGATCAAC-AAGCTGCCGGAAAGC 91500 Query 26075 C-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | ||| || || | || ||||||| ||| ||| | ||||| Sbjct 91501 CGCGTGCACGAGATTGTGCGCGACGCTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCG 91560 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | || |||||| | |||||| |||||||||| |||| ||| Sbjct 91561 CTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTG 91620 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAACCCGT 26251 ||||||| ||||||| | |||||| | | | |||||| ||||| ||||||| Sbjct 91621 GCCGACCGCCTGCTGTACTCGCTGGGCGTGTCTAAGATCTACA--ACGCCAAGAACCCGT 91678 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || ||| || | || |||||||||||||| || ||| | || | Sbjct 91679 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGG 91738 Query 26312 GCGACTA 26318 |||| || Sbjct 91739 GCGAGTA 91745 >seq898 Length=32307 Score = 168 bits (186), Expect = 1e-36 Identities = 550/851 (65%), Gaps = 27/851 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | || |||| Sbjct 18669 TGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTG 18728 Query 25540 AAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 | ||| | ||| |||| | |||| | | |||||| || || ||||| ||| Sbjct 18729 CACGACCTCAACGACTGGGCGAAGCTCA--CGGACAACGAGCGCCACTTCATCAAGCACG 18786 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 || | || ||||| || ||| ||| || || || || ||||||||| | || |||| Sbjct 18787 TGCTCGCCTTCTTCGCTGCCAGTGACGGCATCGTCAATGAGAATCTGGCCATGAACTTCA 18846 Query 25658 CCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 || |||||||| || | | |||| || ||||||||||||||||| |||||||| Sbjct 18847 GCAACGAAGTGCAAGTGCCCG-AGGCTCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 18905 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||||| ||||| || | ||| || || |||||||| | ||| || Sbjct 18906 AACATCCACTCGGAGGTCTA---CTCGCTGCTCATTGACACGTACATCAAGGACACCGTG 18962 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | | || | |||| ||||| || || || || ||| ||| || Sbjct 18963 GAGAAGAACCACCTCCTGTGTGCTATCGAAACGATCCCGTGCGTCCAGAAGAAAGCCAAC 19022 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGCC 25890 ||||| | |||||| | | || | | | ||| | ||||| ||| | || Sbjct 19023 TGGGCACTCAAGTGGTGCGA---CCCGCGTGTGTCGTCCTACCCGGAGCGTCTGCTGGCG 19079 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| | |||||||||||||| ||| || || ||| | |||||||||||||| Sbjct 19080 TTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAG 19139 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| ||||| ||| || |||||| | ||||| | |||||||| Sbjct 19140 AAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGAGATGATCAGTCGCGACGAGGGC 19199 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| ||||| || ||||| | ||| | | | || | || || || | | Sbjct 19200 ATGCACACGGATTTCGCATGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGA 19255 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| | ||| || ||| | || |||||| |||| ||| | ||||| Sbjct 19256 GAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTGAGCACGAGTTCGTCTGCGA 19315 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | |||||| |||| ||||| |||| Sbjct 19316 CTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTT 19375 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAAC 26247 ||||| |||| |||||||| | |||||| | ||| |||||| ||| | ||| Sbjct 19376 CGTGGCTGACCGTCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACA--ACGTCAAGAAC 19433 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || ||||||| ||||| | || ||| | | || |||||||||||||| || | | | Sbjct 19434 CCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGT 19493 Query 26308 GTCGGCGACTA 26318 || ||||| || Sbjct 19494 GTGGGCGAGTA 19504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928795791826240