Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq898 116 4e-21 seq150 107 2e-18 >seq898 Length=32307 Score = 116 bits (128), Expect = 4e-21 Identities = 335/505 (66%), Gaps = 18/505 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAG 65079 ||||||| || || |||||| | || |||| ||| | || ||| |||| | | ||| Sbjct 19009 AGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTGTCG-TCCTACCCGGAG 19067 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | |||||||| | |||||||| ||||||||||| || || || ||| | | Sbjct 19068 CGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTTTGCTCGGTC 19127 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| || || ||||||| || || | || Sbjct 19128 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGAGATGATCAGT 19187 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 || || ||||| | ||| ||| || || | | | || |||| || || | Sbjct 19188 CGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGTACTCCAAG-CT---GGTGA- 19242 Query 65257 AGACCCACTACC---GAAACTA-TCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 || || || || | | |||||| |||||| || || || |||||||| | Sbjct 19243 --ACAAGCTGCCGGAGAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTGAGCA 19300 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTC 65372 | |||| ||| ||| | ||||| | || ||||| |||||||| | |||| Sbjct 19301 CGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTG 19360 Query 65373 CGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTT 65431 | ||||||| |||| ||| | || ||||| || || | |||| ||| | || | Sbjct 19361 CCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTACTCGCTGGGTGTGTCCAAGATCT 19419 Query 65432 GGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACT 65491 |||| ||||| ||||| |||| ||||| | || || | || |||||||||| Sbjct 19420 ACAACGTCAAGAACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACT 19479 Query 65492 TCTTTGAGAAGCGAGTTGGGGACTA 65516 |||| |||| ||| || || || || Sbjct 19480 TCTTCGAGAGGCGTGTGGGCGAGTA 19504 >seq150 Length=92316 Score = 107 bits (118), Expect = 2e-18 Identities = 303/456 (66%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| | | ||||| || | || ||||| |||||||| ||||||||||| || || Sbjct 91296 CTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTC 91355 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| |||| | ||| | |||||||| || |||||||| || || ||||||| || Sbjct 91356 CTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAA 91415 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 ||| || || ||| || ||||| | ||| || || | | || ||| | | | Sbjct 91416 TGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCG-CTTG--CCTCATGTACTC 91472 Query 65247 TTTGCGTAATAGACCCACTACCGAAA----CTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 || | || || || ||| || | |||| || ||| || || || | Sbjct 91473 CAAGC-TGATCAACAAGCTGCCGGAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGG 91531 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCC-ATGTAATCTCATCGGTATGAACTCT 65361 ||||||| | | |||| | ||| | ||||| || | | | |||||||||||||| Sbjct 91532 TGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGT-TGATCGGTATGAACTCG 91590 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GT 65420 | | |||| | | ||||| |||| ||| | || || || || || | |||| || Sbjct 91591 GGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGT 91649 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | ||||| ||||| || || |||| ||||| | || || | || Sbjct 91650 GTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 91709 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||||| |||||||| || || || || Sbjct 91710 CAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 91745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596538123496480