Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1255 122 8e-23 seq313 84.2 2e-11 seq355 82.4 7e-11 >seq1255 Length=9666 Score = 122 bits (134), Expect = 8e-23 Identities = 336/508 (66%), Gaps = 13/508 (3%) Strand=Plus/Plus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| |||||||| || ||||| |||||||| | | ||| || || Sbjct 2814 AGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGC 2873 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||||| || || || |||| || | | | ||||| ||||||| ||| || Sbjct 2874 TTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATG 2933 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | || | | | ||||| |||| |||||| |||||| || |||| || ||| Sbjct 2934 ATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGT--TGT 2991 Query 139669 ACAT--TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTC 139725 ||| |||||||||| |||||| | | ||||| || | |||| | || | | || Sbjct 2992 GCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTG 3050 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| || || ||| |||||||||||| | | ||| ||||| ||||| || ||| Sbjct 3051 TCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGC 3110 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGAC 139845 || | ||||||||| || || || || ||||||||||||| | | | | Sbjct 3111 GGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTC 3170 Query 139846 ATCAATTCGTACGTTTCGATGGCGCTCACAATAT--CCCTTCCGTGGATACCGACAGAGA 139903 || | |||||||| |||| ||| | || | ||||| |||||| || | | | Sbjct 3171 ATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTT--GTGGATGCCCAGCGCCA 3228 Query 139904 CTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAAC 139963 | ||||| | ||| || || ||| || ||||| |||| | || || | Sbjct 3229 CGCGCATGATCATCTGCTGCGGCCGCTCCACCACCTTCCCCTGCACGCGGAAGAGGTAGC 3288 Query 139964 CGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || ||| || |||||| |||| ||||| Sbjct 3289 CGCGCTCGAGCGTCTTGAAGCCGAAGTA 3316 Score = 111 bits (122), Expect = 1e-19 Identities = 353/542 (65%), Gaps = 13/542 (2%) Strand=Plus/Plus Query 138471 CAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATAC 138530 || || ||||| || | ||||| || |||| | || | || |||||||| | || Sbjct 1802 CAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCAAGCAC 1861 Query 138531 TCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTG 138590 || ||| ||| ||||| ||| | ||||| | || || ||||| ||||| ||||| Sbjct 1862 ACGGCGATTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTG 1921 Query 138591 AGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTT 138650 ||| || | || || |||||| ||||||| ||| || ||||| | ||||| || Sbjct 1922 AGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGT---TT 1978 Query 138651 GATT-CGTTC--CTTGAGCGACGACCAGTCCCACAAATCGCT---AGGTTTTTTGTTCCA 138704 || ||||| ||| |||| | ||||| ||||| | | ||| | || ||| Sbjct 1979 AATCACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCCA 2038 Query 138705 CATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACC 138764 ||| ||| |||| || || ||| || || || || | | ||| ||||| || Sbjct 2039 CATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC 2098 Query 138765 AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAAT 138824 || ||| | || | ||| | || ||| | | | | ||||| || || ||| || Sbjct 2099 AAGCTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGAT 2158 Query 138825 CTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGC 138884 | | |||||| || |||| |||||||| ||| | | || ||||||| Sbjct 2159 GTTCATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTTCATCAGAATGAACGC 2218 Query 138885 GTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC 138944 ||||||||| || ||||| || | || || ||||| ||||||| || || ||| || Sbjct 2219 GTCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGA--CTTGCGC 2276 Query 138945 GGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || | || || ||||| ||||| || | ||||| | || || |||||| Sbjct 2277 GCCTCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACC 2336 Query 139003 TT 139004 || Sbjct 2337 TT 2338 >seq313 Length=34572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 24275 GATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 24334 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || || || ||||| || || || || || || || Sbjct 24335 GGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24394 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || ||||||||||| | | || || || || Sbjct 24395 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24454 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| |||| |||| ||||||| ||| Sbjct 24455 TATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 24504 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24563 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || || || ||||| || || || || || || || Sbjct 24564 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24623 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | || || || || Sbjct 24624 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24683 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| |||| |||| ||||||| ||| Sbjct 24684 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24731 >seq355 Length=43175 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 42504 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 42445 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 42444 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 42385 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 42384 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 42350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449873862277880