Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq355 100 2e-16 seq313 91.5 1e-13 >seq355 Length=43175 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||| || |||| | || || ||||| |||||||| || | ||| ||| Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 42435 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | ||||| | |||||||| | |||||| || || || || | || || ||||| Sbjct 42436 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 42495 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 42496 GATCTGCAT 42504 >seq313 Length=34572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||| || | || ||| | |||| || || || ||| || || |||||||| || Sbjct 24962 GTTACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 24903 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 | || ||||| |||| |||| || || || || || |||| |||||||| || | Sbjct 24902 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 24843 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 ||| | || || ||||| ||||||||| |||| | | ||| | | ||| | | Sbjct 24842 CGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCT 24784 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||| | ||||||||| || || || | || || || ||||||||||| Sbjct 24783 CCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| || || || ||| || || || ||||| ||| Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || || || |||| |||||||| || |||| Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||||||| |||| | | ||| | | ||| | ||||| Sbjct 24382 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || | || || || ||||||||||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| || || || ||| || || || ||||| ||| Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || || || |||| |||||||| || |||| Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||||||| |||| | | ||| | | ||| | ||||| Sbjct 24610 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || | || || || ||||||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328687090336320