Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1255 197 1e-45 seq313 100 3e-16 >seq1255 Length=9666 Score = 197 bits (218), Expect = 1e-45 Identities = 569/862 (66%), Gaps = 25/862 (3%) Strand=Plus/Plus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCA 147524 |||||||| ||||| || ||| ||| |||| || || |||||| || || ||| ||| Sbjct 2406 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATGACCTCGCAGCA 2464 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||||| | ||| |||| || ||||| ||| || || ||| |||||| Sbjct 2465 CAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTC 2524 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATG 147641 ||| | |||||| | || | || ||||||| || | || | ||| |||| Sbjct 2525 CTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCA--- 2581 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| | ||| || | || || |||||||| | |||||| |||||| | Sbjct 2582 CAGCTGCTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGTAGAG 2641 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 |||||||||||| || |||| ||| || |||||| | | || || | ||| Sbjct 2642 GGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAG 2701 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 ||| || | | | | || | ||| || ||||| || ||||| |||||||| Sbjct 2702 GCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTA 2761 Query 147822 CATAAGATCGCGCGCTT--TGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT--AAGCA 147877 | || |||||||| |||| |||| ||| ||| | | | | | | | Sbjct 2762 GAACAGGTCGCGCGCCCGGTGCAG--CTCGTTGCCGTGGTT-CTTGCGGAGGTCCAGGAA 2818 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTC 147937 | | | | | |||||||||||| || || | ||||| ||| | || || || ||||| | Sbjct 2819 CTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGC 2877 Query 147938 CGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 |||| |||||| || | |||| || ||| ||| |||||||||| |||||| | | Sbjct 2878 CGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCC 2937 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | | |||||| ||| ||| | |||| | ||| || | | ||||| | Sbjct 2938 CATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGC 2997 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGT 148111 | | ||| ||||||||| | |||| || ||| ||||| | || | |||||| Sbjct 2998 TGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGT-- 3054 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAA 148171 ||||||| |||||| ||||| | | | | |||| || ||||| ||| |||||| Sbjct 3055 AGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGAC 3114 Query 148172 TCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCA 148231 | |||| || || ||| || ||||| |||||||||| || || || || ||||| | Sbjct 3115 GCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGA 3174 Query 148232 TGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCA 148291 |||||||| | ||| | | ||||||| | ||| ||||||||||| ||||||| Sbjct 3175 GCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGCA 3234 Query 148292 TGAGCATGTGCTGTGGTCGTTC 148313 ||| ||| ||||| || || || Sbjct 3235 TGATCATCTGCTGCGGCCGCTC 3256 >seq313 Length=34572 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 24953 ACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 24894 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| || ||||| || || || || ||||| Sbjct 24893 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 24834 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 24833 CTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 24774 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||||||| || | ||| ||||||||| Sbjct 24773 CGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||||||||||| || || || || ||||| || || | Sbjct 24697 GACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 24638 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || |||||| || |||| Sbjct 24637 AAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACG 24578 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||||||| || Sbjct 24577 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 24518 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 24517 ACGAAGATCTGCATG 24503 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||||||||||| || || || || ||||| || || | Sbjct 24469 GACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 24410 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || |||||| || |||| Sbjct 24409 AAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACG 24350 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||||||| || Sbjct 24349 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 24290 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 24289 ACGAAGATCTGCAT 24276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586052801560