Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq313 131 2e-25 seq355 116 3e-21 >seq313 Length=34572 Score = 131 bits (144), Expect = 2e-25 Identities = 173/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| || || ||||| | | || |||| || | ||| |||||| || ||||||| Sbjct 24966 TTTAGTTACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 24907 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| || || || |||| ||||||||||| || || || |||| |||||||||| Sbjct 24906 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 24847 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTC 35680 | | || | || |||||||||| || || ||||||| |||| | | || ||| | Sbjct 24846 CAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAC 24788 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| |||| ||||||||| || ||||||| ||| ||||| || |||||||| Sbjct 24787 GGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 Score = 125 bits (138), Expect = 6e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||| || || || |||| ||||||||||| || || || Sbjct 24467 CTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 24408 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| || || ||||||| || Sbjct 24407 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGT 24349 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| |||| ||||||||| || ||||||| ||| |||| Sbjct 24348 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 24289 Query 35724 CAAATATCTGCATTCTGTGCG 35744 | || |||||||| || ||| Sbjct 24288 CGAAGATCTGCATCTTGAGCG 24268 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||| || || || |||| ||||||||||| || || || Sbjct 24695 CTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 24636 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| || || ||||||| || Sbjct 24635 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGT 24577 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || ||||| |||| ||||||||| || ||||||| ||| |||| Sbjct 24576 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 24517 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 24516 CGAAGATCTGCAT 24504 >seq355 Length=43175 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 42315 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 42374 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| ||| || ||||| | | ||| Sbjct 42375 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 42433 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | ||||| || ||||| |||| |||||| || || ||||||| || |||||| Sbjct 42434 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 42493 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 42494 AAGATCTGCAT 42504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450769815002680