Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq313 132 5e-26 seq1255 123 3e-23 seq355 113 5e-20 >seq313 Length=34572 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 24949 AGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 24890 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 24889 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 24830 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| || || Sbjct 24829 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 24770 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | ||| || ||||| || ||||| Sbjct 24769 ATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 >seq1255 Length=9666 Score = 123 bits (136), Expect = 3e-23 Identities = 282/421 (67%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| | ||||| | ||||| | Sbjct 3247 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGGGCGACATCCAGGCCGCGCTC 3188 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||| ||| || |||||||| | ||||| | || | Sbjct 3187 GAGACGTACGAGCTCATGAGCCAGAAGTTCTTCACGCACGCGACCCCCACGCTCTTCAAC 3128 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| ||||| || |||| |||||| || ||| Sbjct 3127 GCCGGCACGC-CGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGACGACTC 3069 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| ||||| ||| ||||||| | ||||| || ||||| | | |||||| Sbjct 3068 CATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGCGG 3009 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | | || || | ||||||| | ||| |||| ||| ||||| Sbjct 3008 CATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGCTACATCCGAGGCACGAACGG 2949 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 ||| || | |||||| ||||||||||||| || ||| ||| | || || Sbjct 2948 CTCGTCCAATGGGATCATCCCCATGCTGCGCGTGTTCAACGACACGGCGCGCTACGTGGA 2889 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || |||||||| ||| | |||||||| |||||||||||||||| || Sbjct 2888 CCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 2829 Query 7980 C 7980 | Sbjct 2828 C 2828 >seq355 Length=43175 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 42315 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 42374 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 42375 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 42434 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 42435 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 42493 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 42494 AAGATCTGCAT 42504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505371733916920