Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1255 255 7e-63 seq150 163 4e-35 seq898 156 5e-33 seq1443 107 2e-18 seq368 86.0 8e-12 >seq1255 Length=9666 Score = 255 bits (282), Expect = 7e-63 Identities = 908/1395 (65%), Gaps = 53/1395 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || || | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 1872 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 1931 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 118300 || || |||||||| |||| ||||| ||| || | || | || |||| ||||| Sbjct 1932 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 1988 Query 118301 --CTTGAGAGCGTCCCAGT--CGTAGTTGAG-CTTTGTC----TCCCCCTGCCACATATC 118351 ||| || || |||||| | || | | | | | |||| |||| || Sbjct 1989 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCC----ACATGTC 2044 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 ||||||| |||||| | | || |||||||||| || ||||| || ||||| || Sbjct 2045 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAG 2101 Query 118412 CTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCG 118468 |||| || | || || ||| | || |||| || || || || || ||| Sbjct 2102 CTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT 2161 Query 118469 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCA-CAAAATAAATACA 118526 || | | |||| ||| || |||||| ||| || || ||| || | Sbjct 2162 CATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTT--CATCAGAATGAACGCG 2219 Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || ||||| || ||||||| || | ||||| || | ||| || ||||| || || Sbjct 2220 TCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCC 2279 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 | ||||||| || | || ||| || ||| | || || || ||| || |||||| Sbjct 2280 TCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTT 2339 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGG 118705 | || | ||||| | ||| | || || || || || | || |||| || Sbjct 2340 ACCACCTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGG 2395 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||||| | |||||||| || ||||| | |||||| |||||||| || | Sbjct 2396 CAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGAC 2455 Query 118766 TTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 || ||||||||| ||| |||||||||| ||||| || || ||||| Sbjct 2456 CTCGCAGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCG 2512 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||| ||| |||||||| |||||| | ||| ||||||||| | |||| | || || Sbjct 2513 GTTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGAT 2572 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCTTCCTCGT 118938 || ||| || | || | ||| | ||| ||| || || ||||| ||||| Sbjct 2573 GGCGAACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGT 2628 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 |||| ||||||||| |||||||| || ||| | ||| | || || || || | | Sbjct 2629 ACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGT 2688 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| || ||||| ||| ||| |||| |||||||||||| || |||| Sbjct 2689 TGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGA 2748 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGC 119117 ||||||||| |||| || || || || || || | | || || || || Sbjct 2749 CCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGG 2807 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | |||| || || | | || ||||||||||| |||||||| | |||| || ||| Sbjct 2808 AGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCC 2867 Query 119178 TTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 || || | || |||||| || || | ||| ||| |||| || || || ||||| Sbjct 2868 TTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATG 2927 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294 || ||||| |||| ||| ||| || || || || || || |||| | || Sbjct 2928 GGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATG 2987 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 | ||| ||| || || || || || |||||||| ||||| |||||||| | |||| Sbjct 2988 TTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGC 3047 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || ||||||| || ||||| ||||| ||| | || | |||||||| ||||| Sbjct 3048 GTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 3107 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473 || || | || || || ||||||||||| || || |||||||| |||| | || | || Sbjct 3108 TGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGA-ACTTCTG 3166 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 | ||| ||||| ||||| | |||| | ||||| || ||| || || | || Sbjct 3167 GCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGC 3226 Query 119534 GACCCGCATAAACAT 119548 || ||||| | ||| Sbjct 3227 CACGCGCATGATCAT 3241 >seq150 Length=92316 Score = 163 bits (180), Expect = 4e-35 Identities = 358/528 (68%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 91745 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 91686 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| | ||| | || | ||| || | | | || || || Sbjct 91685 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGG 91626 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||| | |||| | | |||||||||||||| | | Sbjct 91625 TCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACC 91566 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | |||| | | |||||| ||||||| || ||||| || |||| Sbjct 91565 GGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGTGC 91506 Query 129968 ATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAAC---- 130021 | | | || | ||| | | ||| || |||| |||| | ||||| | Sbjct 91505 ACGCGGCTTTCCGGCAGCT-TGTTGATCAG---CTTG--GAGTACATGAGGCAAGCGAAG 91452 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | |||||||||||| |||||| ||||||||||||| ||||| |||||| Sbjct 91451 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 91392 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || | || || ||||| |||||||||||||||||| Sbjct 91391 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 91332 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTT 130200 || || || || | |||||||| | ||||| | || | || ||||| | Sbjct 91331 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG-GACACACGCGGGTCGCACCACCT 91273 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||||| || || || ||| || ||||||| ||||| ||| || Sbjct 91272 GAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 91225 >seq898 Length=32307 Score = 156 bits (172), Expect = 5e-33 Identities = 386/579 (67%), Gaps = 14/579 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||| ||||||||||||| ||||| || | | ||| | ||||| Sbjct 19504 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 19445 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || ||||||||||| ||| | || | ||| || | | | || ||||| Sbjct 19444 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACGG 19385 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||||| |||| | |||||||| ||||| || | Sbjct 19384 TCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCACC 19325 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| ||| |||| | | |||||| | |||||| || |||||||| |||| Sbjct 19324 GGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTGG 19265 Query 129968 A-TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA----AAC 130021 | | | ||| | ||| | || || |||| |||| | |||| || Sbjct 19264 ACTCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCATGCGAAA 19211 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 ||| ||| | |||||||| || ||| | || |||||||||| || || |||||| Sbjct 19210 TCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATG 19151 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| | || ||||| ||||| ||||||||||| |||||| Sbjct 19150 AGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCTCC 19091 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTT 130200 || | || ||||| | |||||||| | |||| || || | || ||||||| Sbjct 19090 ACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGGGTCGCACCACTT 19032 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 | ||||| | || || |||| || ||||||| || | ||| || | ||| | Sbjct 19031 GAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGTG 18972 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 ||||| || | || ||||||||| | || ||||| Sbjct 18971 GTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 18933 >seq1443 Length=13085 Score = 107 bits (118), Expect = 2e-18 Identities = 306/462 (66%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 ||| ||||||| || ||||| ||||| || || |||| ||| | |||||| ||||| Sbjct 7973 CACCGTGATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGC 8032 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGT-CTCGTTATCAAAGCCATCCATCTCAG 14168 ||||||||| | || | || || | |||| |||| | ||| ||||||||||| Sbjct 8033 GCGGTTCGTGCCGGCAAGCACCACCACGCCCTCACTCGAGTTGAAA-CCATCCATCTCGA 8091 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCAC 14225 || || || || | || | ||| || || || || || | | |||| | Sbjct 8092 CCAGCAGCTGGTTCAGCGTGTTTTCACGCTCGTCGTTACCACCCGAGAAGTTACCCTTGC 8151 Query 14226 TGCGTTGCTTAC-CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | ||| || | | || || || |||||||||||||| || ||||| || |||| || Sbjct 8152 TACGT-GCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTGCA 8210 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||||| | | || | ||| ||||| | | ||| || || || |||||||| | Sbjct 8211 CGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGATG 8270 Query 14345 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCG 14404 |||| | | ||||| || ||| || ||| ||| ||||| || |||| || Sbjct 8271 AAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCGCC 8330 Query 14405 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCA 14464 || || ||||| || || || || || |||| || ||||| |||||| ||||| Sbjct 8331 AGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGGCA 8390 Query 14465 CCACTGCCAAAGTAGCG-TTCAGGTTGTTTAAGGAAGTCCAC 14505 ||| | | |||| ||| ||||| |||||||||||| Sbjct 8391 CCAAGCTCTGTGAAGCGCTTCTGGTTG-CGAAGGAAGTCCAC 8431 >seq368 Length=32231 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 ||||||||||| | || || || ||||| | |||||| || || ||||| |||||| Sbjct 15950 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 16009 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || || ||||| ||||| || | || ||||| || || || | ||| || ||||| || Sbjct 16010 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 16069 Query 180040 TCCGTCACGATGAGCGTACACT 180061 || |||| || |||| |||| Sbjct 16070 TCGGTCAAAATAAGCGAGCACT 16091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618402569812760