Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq718 116 1e-20 seq313 102 2e-16 seq3970 91.5 4e-13 seq3930 91.5 4e-13 seq124 89.7 2e-12 seq1230 84.2 7e-11 >seq718 Length=17956 Score = 116 bits (128), Expect = 1e-20 Identities = 318/481 (66%), Gaps = 7/481 (1%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || | ||||| || || || || ||||| |||| Sbjct 5532 ACGGTGCCGGCCTACTTCAACGACTCGCAGCGGCAGGCGACCAAGGACGCTGGAGCCATT 5473 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || || || || ||| | || || || || || || ||||| || ||||| |||||| Sbjct 5472 GCTGGTTTGAACGTGCTACGCATCATCAACGAGCCGACGGCTGCTGCGATTGCCTATGGG 5413 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | | | || | || | || || |||||| |||| || || || Sbjct 5412 CTTGACAAGAAAGGAGGC---GAGCACAACGTGCTGATCTTTGATCTAGGCGGCGGGACG 5356 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||| || || || || || ||||||| || || || || || || || || || || Sbjct 5355 TTTGACGTCTCGCTGCTTACGATTGAAGAAGGCATCTTCGAGGTGAAGGCGACGGCGGGC 5296 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | || || ||||| || || || ||||| || | ||||| || Sbjct 5295 GACACGCACTTGGGCGGCGAAGACTTCGACAACCGTCTGGTCGAGTTCTTTGTGGCCGAG 5236 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| ||||| | || || | || | | || |||| || || | Sbjct 5235 TTCAAGCG-CAAGCACCGCAAGGACATGACGGCGAACCAGCGCGCTCTGCGGCGTCTCCG 5177 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || ||||||||||| || || || |||| || || | | || | | |||| || Sbjct 5176 CACGGCGTGTGAACGAGCCAAACGCACCTTGTCCACTTCGGCGCAGGCGTACCTTGAGAT 5117 Query 350038 TGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 ||| || | |||| ||||||| |||||| || | ||||| ||||| |||||||| | Sbjct 5116 TGACTCGC-TGCTGGATGGCATCGATTTCAACTCGACCATTACCCGTGCGCGGTTTGAGG 5058 Query 350097 A 350097 | Sbjct 5057 A 5057 >seq313 Length=34572 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || || || || ||||| || || ||||| || || Sbjct 24506 CATGCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTC 24447 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || ||||| ||||| || || ||||| ||||| Sbjct 24446 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 24387 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||||||||| || || || || ||||| || || || || Sbjct 24386 CGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 24327 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 24326 CACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || || || || ||||| || || ||||| || || Sbjct 24734 CATGCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTC 24675 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || ||||| ||||| || || ||||| ||||| Sbjct 24674 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 24615 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||||||||| || || || || ||||| || || || || Sbjct 24614 CGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 24555 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 24554 CACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| |||| ||||| | | || || || || || || ||||| || || || || | Sbjct 24966 TTTAGTTACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 24907 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || || || || || ||||| ||||| || || ||||| | Sbjct 24906 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 24847 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||||||||| || || || || ||||| || || | Sbjct 24846 CAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACG 24787 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| || || || || || || || |||||||| Sbjct 24786 GCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 >seq3970 Length=1556 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 406 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 347 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 346 CCCTGCTTCTCCA 334 >seq3930 Length=1052 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 753 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 694 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 693 CCCTGCTTCTCCA 681 >seq124 Length=53545 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 51342 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 51283 Query 74548 TCGGGCA 74554 ||||||| Sbjct 51282 TCGGGCA 51276 >seq1230 Length=11313 Score = 84.2 bits (92), Expect = 7e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 235894 ATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACCCA 235953 |||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | |||| Sbjct 10891 ATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATACCCT 10950 Query 235954 GCATCTCCA 235962 || |||||| Sbjct 10951 GCTTCTCCA 10959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515172452674463