Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq58 178 1e-39 >seq58 Length=69883 Score = 178 bits (196), Expect = 1e-39 Identities = 448/676 (66%), Gaps = 15/676 (2%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||||||||||| | ||| || ||||| || || || | | |||| Sbjct 49450 AGCTGCTTCTGAAGCGGTTCCACGTGGTTCAGATACACGTGTGCATCGCCTATGACGTGG 49391 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 | |||||| || || | || || || || || || | | ||| || || | |||| Sbjct 49390 ATAAACTCGCCAGGCTTCAGTCCAGTCACCTGCGCTACTAGTCGCGTTAGAAGCGCGTAG 49331 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||| ||||| || || || ||||| |||||||| | || | |||||| | ||| || Sbjct 49330 CTGGCAATGTTGAAAGGGACGCCGAGTCCCATGTCGGCAGAGCGCTGGTACATCTGGCAA 49271 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||||||||| || | |||||| || || || ||||| Sbjct 49270 GACAACTCCCCGTCGGCCACGTAAAACTGGCAGAACATGTGGCATGGTGGCAGCGCCATC 49211 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGT-CTTCTGGGTTGTT 30162 | | || |||||||| || | | | || || | || | || || | || Sbjct 49210 TCGTTGAGATCAGCTGGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCGGGTTCGTA 49151 Query 30163 C----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | || || | || | ||| ||||| ||||| ||| || |||||| Sbjct 49150 CGCAGCTTGTGAATCACCTCAGCG------AGCTGGTCCACGCCCTGACCACTGTAGTCC 49097 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || ||| | |||||||| || ||||| || | ||||||||| |||||||||||||| Sbjct 49096 GCATGCATATTCGTGTACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACCGGTCCG 49037 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 ||||| || |||||| | || | || | |||||| | | || | || || ||| Sbjct 49036 AGGTCGCCAACTTCCCGATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCGATCCATTG 48977 Query 30338 GCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 |||||||||| | | ||||| | | | | | ||||| || || | | Sbjct 48976 CCGTCCCAGATGTGAATGTTCTTCTGCTGCAACGTGTGAGCGCTTGTGTCTCCGCTAATG 48917 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGG 30455 ||||||||||||||||| | || | ||| || |||| ||||||||| || | ||| Sbjct 48916 AACCACAGCAGCTCCTCGGCCACACCTCGCCAGAACACCCGCTTGGTCGTCAGCAATGGG 48857 Query 30456 GAAACTGTC-CCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTG 30514 || || || | || | |||| ||| | |||||||| |||| ||||| Sbjct 48856 AGCACGTTCTCCCTCAGACTAAACCTCATCTGCGCTCCAAACACTGACAGCGTCCCCGTT 48797 Query 30515 CCCGTCCTGTCTCCCC 30530 ||||| | |||||||| Sbjct 48796 CCCGTGCGGTCTCCCC 48781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406289497996332