Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq602 154 7e-33 >seq602 Length=26539 Score = 154 bits (170), Expect = 7e-33 Identities = 333/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| || |||||| || | ||| | | ||||||||||| || ||||| || Sbjct 14089 TGCCTTCATCGATGCAGAGCACGCCATTGACGCCCACTACGCCAAGGCCCTGGGTGTCGA 14030 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | |||| ||| || ||||||||| | || || | || |||||||||| ||| Sbjct 14029 CATCGATGCCCTGTACGTCTCGCAGCCGGACTCCGGAGAAGAAGCTCTGGAGATCGCTGA 13970 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || || || | | || |||| || | ||| |||||||| || || Sbjct 13969 CACGCTCATCCGATCGGGAGCGGTGGATCTCGTGGTGCTGGACAGCGTGGCGGCTCTTGT 13910 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 |||||| || |||||||| || || || || ||| || | | ||||| ||||| || Sbjct 13909 GCCGCGTGCAGAGCTCGAGGGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGTCT 13850 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 |||| || || |||||||| | || || | | |||| |||| ||| | | Sbjct 13849 CATGAGCCAAGCGCTGCGCAAGTTGACTGGATCGCTGTCCAAGTCCAACTGCACCATTA- 13791 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGA 66595 ||| | |||||| | ||| ||||| | || ||| || ||| |||| || Sbjct 13790 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGG---CGTCATCTTCGGGTCCCCG---GA 13739 Query 66596 GACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 66655 | || ||||||| | ||| ||| | | |||||| || || ||| ||||| |||| || Sbjct 13738 GGTGACATCGGGCGGTACGGCGTTGCGCTACTACGCGTCGGTGCGCCTGGATATCCGCCG 13679 Query 66656 CATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGT 66715 || | || ||||| || || || |||||||||| || ||| ||||| | Sbjct 13678 CAAGACAGCCATCAAGGAGGGTGACCAGATTGTCGGCAACGAAACGGTGGTCAAGGTGGC 13619 Query 66716 CAAGAACAAGCTGGC 66730 ||||||||||||||| Sbjct 13618 CAAGAACAAGCTGGC 13604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240947604189300