Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq313 111 1e-19 seq355 109 5e-19 >seq313 Length=34572 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || ||||| || ||| || || || |||| || Sbjct 24484 ACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 24425 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | || | || ||| |||||| Sbjct 24424 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 24365 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| || | ||| | | | || || || ||||||||||| |||||| | || Sbjct 24364 ATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 24306 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||||| || || || ||||| |||||||| Sbjct 24305 GCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24273 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || ||||| || ||| || || || |||| || Sbjct 24712 ACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 24653 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | || | || ||| |||||| Sbjct 24652 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 24593 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| || | ||| | | | || || || ||||||||||| |||||| | || Sbjct 24592 ATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 24534 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 24533 GCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 24940 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 24881 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | || | || ||| |||||| Sbjct 24880 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 24821 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| || | ||| | | | || || || ||||||||||| |||||| | || Sbjct 24820 ATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 24762 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 24761 GCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 >seq355 Length=43175 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || ||| |||||| ||||||||| |||| | | | | Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 42435 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 42436 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 42495 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 42496 GATCTGCAT 42504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429523502697773