Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq338 118 4e-22 >seq338 Length=41802 Score = 118 bits (130), Expect = 4e-22 Identities = 198/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| |||||||| | |||||||||| || | | | | Sbjct 18937 CCATGCACATGTGCGTGGCCTCGATGACCACGGCCACGCCCTTGGGCTCAATGACGCCCA 18878 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | |||||||| |||||||| ||||| ||||| || | | Sbjct 18877 TAATGGCGTTGGCGATCTGCTTGGTGAGCCGCTCCTGCACCTGCAGCCGGCGCGAGAAGA 18818 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | | || ||||||||| || || | | ||||| || ||||||| Sbjct 18817 CCTCGCTGACC--CTGGCCAGCTTGCTGAGCCCGAGCACCTTGCCGTTGGGGATGTAGCC 18760 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||||| | | Sbjct 18759 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTAGAGGTCG 18702 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCCGCA 31279 ||||||||||| | ||||||| ||| || | |||| || Sbjct 18701 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCCTCA 18663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187280212225856