Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq313 172 1e-37 seq355 136 8e-27 seq150 134 3e-26 seq368 125 1e-23 seq467 116 8e-21 seq381 86.0 1e-11 >seq313 Length=34572 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || |||||||| || | ||| || || |||||||||||||| Sbjct 24959 ACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 24900 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || || ||||||| || || |||||| ||| Sbjct 24899 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24840 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || || || ||||| ||| | ||||| | |||||| | || | Sbjct 24839 GATGCCCTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 24781 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 24780 CGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || |||||||| || | ||| || || ||||| |||||||| Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || |||||| ||| Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || || || ||||| ||| | ||||| | |||||| | || || Sbjct 24382 ATGCCCTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||||| |||||| ||||| |||||||| || Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24273 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || |||||||| || | ||| || || ||||| |||||||| Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || |||||| ||| Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || || || ||||| ||| | ||||| | |||||| | || || Sbjct 24610 ATGCCCTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 >seq355 Length=43175 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 42435 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 42436 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 42495 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 42496 GATCTGCAT 42504 >seq150 Length=92316 Score = 134 bits (148), Expect = 3e-26 Identities = 570/883 (65%), Gaps = 27/883 (3%) Strand=Plus/Plus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| || || | | |||| | ||| | ||||| |||||||||| ||| |||| || Sbjct 90885 CTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTG 90944 Query 229595 GACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACG 229653 ||| | ||||| || | | |||| ||| || |||||| | ||| |||| Sbjct 90945 GACGGCCGAGGAGCTCGACTTGG-TGCACGACCTCAATGACTGG---GCGAACCTCACGA 91000 Query 229654 ACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCG 229713 || | || || || |||||||||||| | || | || ||||| | ||||||||||| Sbjct 91001 ACAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCG 91060 Query 229714 TGATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGT 229773 ||| || ||| || | ||||||||| ||||| ||| || ||||| || | Sbjct 91061 TGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCT 91120 Query 229774 TTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTG 229833 | |||| | ||||| || || | || ||||| || | || || |||| Sbjct 91121 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTG 91180 Query 229834 ACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCC 229893 || || ||| |||| ||| | | | ||| | |||||||| | ||||| Sbjct 91181 ACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAGACCATCC 91240 Query 229894 CGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGT---AAATCGT 229950 || ||| || ||||| | ||||| | | |||| || || || || | Sbjct 91241 CGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCTCCT 91300 Query 229951 TTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 | |||||||| | || | | ||| ||||| || | ||||| || |||| Sbjct 91301 ACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCT 91360 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || | ||||| ||||| ||| ||| ||| |||||||||| ||| | | ||||| | Sbjct 91361 GCTCTATCTTCTGGCT---CAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATG 91417 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAG-GTCTTGTATTCGAAG 230126 | |||||||| | ||||| || | || || | | || || | || |||| || ||| Sbjct 91418 AGCTCATCAGCCGTGACGAGGGCATGCA-CACCGACTTCGCTTGCCTCATGTACTCCAAG 91476 Query 230127 CTAAATAACAAACTACCTTTCGAAA--CG-GTGAAACAAATCGTCACAGAAGTAGTTGCA 230183 || | ||||| || || |||| || ||| | | || || || | || | Sbjct 91477 CTGATCAACAAGCTGCC---GGAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGGTG 91533 Query 230184 AATGAAAAGGAGTTCATTTGCGACGCTATTCC-TTGCCGTCTTATCGGCATGAATGCTGA 230242 | ||| | |||||| | ||||| | | || || || | ||||| ||||| | | Sbjct 91534 ATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGT-TGATCGGTATGAACTCGGG 91592 Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302 |||||| | ||||| ||||| ||||| || || || | | |||| ||| | Sbjct 91593 GCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCT-GGGCGTGT 91651 Query 230303 GAAAG-TGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361 ||| | || ||| |||||||||| |||| | ||||| | || || || ||||| | Sbjct 91652 CTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCA 91711 Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 | || ||||||||||| |||||||| |||| || || ||||| Sbjct 91712 AGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGC 91754 >seq368 Length=32231 Score = 125 bits (138), Expect = 1e-23 Identities = 294/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| || ||||||||| || | ||||||| || || || Sbjct 14866 AGACCAACCCGTACCGATACCTTCAGCACCATTCACGAGCAGCATCGGGATGATAGGCAC 14925 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || |||| |||| | |||||||||| ||| ||||| |||||||| Sbjct 14926 GTAGTAAACGGGTTCAACTGGGAATCCATCGTCGTCGGCGTAGCGCAACAGCGCATCATC 14985 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| ||||| || | ||| |||||| ||||| | | || Sbjct 14986 GTCTTCGGGGAATACCAAGCGCGTGTGCTTTTGCAGCAACGTGAAGATGTAACGAGGGCT 15045 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACC-CTCGG--GCAGTAGCCA 273856 || ||||| || || |||| || | |||||||||||| ||| ||| ||| Sbjct 15046 AGCGGCATCCTTACCTCCCTGCAACCGGGTACCAAACTGACCTGACGGATACAGAAGCGG 15105 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | | ||||||| || ||| | ||||| |||||||| || |||||| || || || Sbjct 15106 G---AGGTTGTTGGAGCCCACGAAGTCCTGCGCCATATTGACAATAGTCGAGTGTAGCGA 15162 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | | || |||||||| ||||| |||| || | || || ||||| || ||||| Sbjct 15163 TGCTTCACCGTGGTGGTAGGCTGTGTGCTCACTGCAGTAGCCCGCCAACTGTGCCACCTT 15222 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTT 274036 ||| |||||||| | || ||||| || | | | | ||| || ||||| ||| ||| Sbjct 15223 CACTTCGCTCGTGAGCTTGCGCTTCAAACACGCAAAAAGCACTTTACGCTGTGAGATCTT 15282 Query 274037 GAACCCATCAACGACCGATGG 274057 | || || || || ||||| Sbjct 15283 CAGACCGTCGACCACTGATGG 15303 >seq467 Length=26389 Score = 116 bits (128), Expect = 8e-21 Identities = 664/1053 (63%), Gaps = 47/1053 (4%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| || ||||| ||||||| ||||||||||| |||| ||| ||| || Sbjct 13267 TCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAGG 13326 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 13327 TGAGACTCAATGTGGTGGAATGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGC 13386 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| || || || |||| || || | ||| Sbjct 13387 TTCCACACCTGACCACTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATAGTCGAC 13446 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCA-TT 316400 || || || ||||| |||| || |||| | | ||| | | | ||| | Sbjct 13447 TTACCGGCACCGTTGGGGCCCAGCACGGCGATAC------GGCTCGAAAGC-GCGCACGT 13499 Query 316401 CAC------GTTGTCGAAGACCAGTTTGTCCGTCCCAGGATACTTG-AAACCCACCCCGC 316453 ||| ||||| || | | ||| || || || |||| | | || || Sbjct 13500 CACCGAGATGTTGTTGATCGACGGCTTGGGGGTTCCCGGGTACTGGTACGAGCAGTTCG- 13558 Query 316454 GAAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGGGA 316513 || ||||||| |||| ||||| | | || || || || || |||| Sbjct 13559 TCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCCGGGA 13618 Query 316514 ATTTCCACGT---AGTCTTCGTCTCGGCGAGCGTGTAGTA--ACTTGCAGATTCGGGACG 316568 | | || | | | | || || ||||| |||||| |||| | || || Sbjct 13619 ACGTGAACTTCACATTGTCCGACT---CGAGCTCGTAGTACGCCTTG--GCCTCAGGCTT 13673 Query 316569 CTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTA 316628 || || |||||| ||||| || || || || || |||||||||| | || ||||| Sbjct 13674 CTGCTCCACGAACTCGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACG---GGTCTCGTA 13730 Query 316629 ATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACA 316688 || ||||| || ||||| | |||||||| ||||| ||||| || || || | | Sbjct 13731 GTGAATGATGTTGGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATCGA 13790 Query 316689 TGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAG 316748 | ||| ||| | ||| || | ||||||| || ||| ||| | Sbjct 13791 GGTCACGTTCGGCAGGCTCGTCAGGTAATTCTCCAGCCAGGCGACGTTCTTGACATCCAA 13850 Query 316749 ATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAG 316808 ||||| ||||| || ||||| || || | | || | | |||||| || || || || Sbjct 13851 GTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCAG 13910 Query 316809 AGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTG---TTAATCGGGGCAGATTGGCGCTC 316865 | || ||||| ||||| || || ||||||||| | | |||| || ||| Sbjct 13911 CTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCACACCCTGGGC---CTGCATCTC 13967 Query 316866 AACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGACCATGTGTTTTC 316925 | ||||| || |||| || | | | ||||||| |||| ||| Sbjct 13968 AGGGGTGAAGCCCACGCTGCCGAGGGTGTCCCTAACCTCGTCACGAG-----GTGTGTTC 14022 Query 316926 TTTAACTTGGTCGTCATTGGCA---ATGAAGTCAACGATAGACGTGTTAGATTCGGATCC 316982 || | |||| |||| || |||||||| || | ||| | || || || | Sbjct 14023 TTCA----GGTCCTCATCAACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGAAGC 14078 Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042 | |||| |||||||| | |||||||||| || | ||||| || || | Sbjct 14079 CTGCAGGTTGTGCTCAACGAACACAGTTTTCAGCTCGTCGCGGCTGGGGAAGCCCTCGAG 14138 Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102 ||| || || || || | |||||| |||||||| ||| ||||||||| ||||| || Sbjct 14139 CTGGCCATTGGAGATGGCGCGCATCAGGGTCGACTTACCACAACCATTGGGACCGCACAG 14198 Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 ||| || || | || ||| || || |||| ||||||||| |||||| ||||||| Sbjct 14199 ACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACC 14258 Query 317163 ATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 || || || |||||||| || | |||||||| Sbjct 14259 GTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 14291 >seq381 Length=39271 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 34227 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 34169 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 34168 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 34118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046682590708534