Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq415 161 2e-34 seq1482 113 1e-19 seq1760 91.5 3e-13 seq588 87.8 4e-12 >seq415 Length=29729 Score = 161 bits (178), Expect = 2e-34 Identities = 677/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| || ||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 16609 CTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 16668 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 16669 GTGAGACTCAATGTGGTGGAATGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 16728 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| | ||||| |||| ||| || | || Sbjct 16729 CTTCCACACCTGACCACTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATAGTCGA 16788 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT- 319228 || || |||||||| ||||| ||| |||| | | ||| | | | ||| Sbjct 16789 CTTACCGGCACCGTTGGGGCCCAGCACGGCGATACGGCT------CGAAAGC-GCGCACG 16841 Query 319229 TCAC------GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 |||| ||||| | | || || ||||| |||| | || || | Sbjct 16842 TCACCGAGATGTTGTTGATCGACGGCTTGGGGGTTCCCGGGTACTGGTACGAG-CAGTTC 16900 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| ||||| | | ||||| || ||||| ||| Sbjct 16901 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCCGGG 16960 Query 319342 AACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||| | ||| | ||| || |||| || ||||||| | | || || Sbjct 16961 AACGTGAACTTCACATTGTC--CGACTCG---AGCTCGTAGTACGCCTTGGCCTCAGGCT 17015 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || || |||||||||||| || || |||||||| |||||||||| || | |||| Sbjct 17016 TCTGCTCCACGAACTCGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 17072 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | || || || |||||| || | ||||||||| || |||||||| ||||| || | Sbjct 17073 AGTGAATGATGTTGGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATCG 17132 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 | | |||| | ||| | ||||||| | || ||| ||||| ||| | Sbjct 17133 AGGTCACGTTCGGCAGGCTCGTCAGGTAATTCTCCAGCCAGGCGACGTTCTTGACATCCA 17192 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || | Sbjct 17193 AGTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCA 17252 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 319696 | | |||||||| ||||| || || ||||||||| | || ||| || | Sbjct 17253 GCTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCA 17306 Query 319697 TATCA------AAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATG 319749 | ||| ||||| || | || || || | | || ||||||| || Sbjct 17307 TCTCAGGGGTGAAGCCCACGCTGCCGAGGGT-GTCCCTAACCTCGTCACGAG-----GTG 17360 Query 319750 TTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGAC 319809 | || ||| | | |||||| |||||||| | | | | | || || || Sbjct 17361 TGTT-CTTCAGGTCCTCATCAACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 17419 Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 319868 | | || | ||| || ||| | ||||||||| | | ||| | |||||| || || Sbjct 17420 GCCTGCAGGTTGTGCTCAACGAACACAGTTTTCAGCTCGT-CGCGGCTGGGGAAGCCCTC 17478 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||| || || |||||||||||||| || ||||| || || || || || Sbjct 17479 GAGCTGGCCATTGGAGATGGCGCGCATCAGGGTCGACTTACCACAACCATTGGGACCGCA 17538 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| || || || ||| | || | ||||||||| ||||| | || Sbjct 17539 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACC 17598 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || || || | ||||| || Sbjct 17599 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 17634 >seq1482 Length=10157 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 8959 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 9018 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9019 CCCACGGTGGGC 9030 >seq1760 Length=10308 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 9888 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 9947 Query 165771 CCACG 165775 ||||| Sbjct 9948 CCACG 9952 >seq588 Length=22666 Score = 87.8 bits (96), Expect = 4e-12 Identities = 552/866 (64%), Gaps = 30/866 (3%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | |||||| Sbjct 21014 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGG 21073 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || | |||| || || || ||| ||| || |||||| | ||| |||| | Sbjct 21074 ACGGCCGAGG-AGCTCGACTTGGTGCACGACCTCAATGACTGG---GCGAACCTCACGAA 21129 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | |||| ||||| |||||||| ||| | || | ||| || || | | ||| ||||| || Sbjct 21130 CAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGT 21189 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 || || || ||| | ||||| || ||||| ||| || ||||| || || Sbjct 21190 GAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTT 21249 Query 229998 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGA 230057 || | | ||| | || ||| ||||| || || || | ||||| || || Sbjct 21250 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 21309 Query 230058 CGCGCTTATTTCCGACG--AGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACATC 230115 | || || |||| | |||| | || | || | |||||| || | |||| Sbjct 21310 CACGTACATCAAGGACGGTGTCGAGAA--GGACCACCTGCTGCGTGCCATCGAGACCATC 21367 Query 230116 CCG-GCGGTTCA-TAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGT 230173 ||| ||| ||| || || || | ||||| | | ||| || || || || | Sbjct 21368 CCGTGCG--TCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCT 21425 Query 230174 -TTGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 | || |||||||| | |||| | || || || || | || || || | Sbjct 21426 CCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCT 21485 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | ||||| ||||| ||| || | ||||| || ||| | | || || | Sbjct 21486 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATG 21545 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAG 230349 || ||||||| || |||||||| | || || | | |||| || ||||| || ||| Sbjct 21546 AGCTCATCAGCCGTGACGAGGGCATGCA-CACCGACTTCGCTTGCCTCATGTACTCCAAG 21604 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || |||||||| || || || || | | || | || || || | | Sbjct 21605 CTGATCAACAAGCTGCC-GGAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGGTGAT 21663 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAAC 230467 || | |||||| | | ||| | ||| || | || || || |||||| | | | Sbjct 21664 TGAGCACGAGTTCGTGCGCGACTC-GCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGC 21722 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT-TACGAG 230526 | ||| | || |||||||| ||||| ||||||||| || || ||| | | || | Sbjct 21723 TCATGTGCCAATACATCGAGTTCGTGGCCGACCGC----CTGCTGTACTCGCTGGGCGTG 21778 Query 230527 ---AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || | |||||| | |||||||| || | | ||||| | || ||||| || || Sbjct 21779 TCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGC 21838 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||||||| |||||||| Sbjct 21839 AAGACCAACTTCTTCGAGAAGCGTGT 21864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057750852462110