Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1009 104 2e-17 seq588 95.1 1e-14 >seq1009 Length=13826 Score = 104 bits (114), Expect = 2e-17 Identities = 300/457 (66%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || ||||||||||| || | |||||||| | ||||| | ||||| || | Sbjct 3619 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 3678 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | ||| ||||| || || ||||| | ||| || | || | || || || | Sbjct 3679 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 3738 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| || || |||||||| | | || || | ||| | || | Sbjct 3739 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 3798 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || | |||| | |||||| | || | ||| |||||||| Sbjct 3799 GCGGGTCGCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCG 3857 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 || || | | | | || ||| ||| | || ||||| || ||||| || Sbjct 3858 ATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGC 3917 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||| | || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 3918 GAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCC 3977 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 || | | ||| ||||| | ||| |||| || ||||| || || |||||||||| Sbjct 3978 TCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCCGT 4035 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || || ||||| || || | | ||||| ||||| Sbjct 4036 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAA 4072 >seq588 Length=22666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 21318 ATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 21259 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || |||| | || ||||| | ||| |||| || | Sbjct 21258 AAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCA 21201 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || ||||||||||| |||||||| || || || || |||| | ||||| ||||| Sbjct 21200 GGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAAAGCCAGCACGTGCTTGATGAA 21143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517510685079960