Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-18 >seq41 Length=78637 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || ||||| |||| ||| || ||||||||||| || |||| || || || Sbjct 48903 ATGGCGCTGCCACCATGCCACATGTTCTGCCAGTTTTACGTGGCCGACGGGGAGTTGTCT 48962 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||| | || | || ||||| || || || || ||||||||||| | Sbjct 48963 TGCCAGATGTACCAGCGCTCTGCCGACATGGGACTCGGCGTCCCTTTCAACATTGCCAGC 49022 Query 19092 TATGCACTTCTTAC-CTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 || || ||||| || | || |||||||||| || || ||||| || | || || || || Sbjct 49023 TACGCGCTTCTAACGCGAC-TAGTAGCGCAGGTGACTGGACTGAAGCCTGGCGAGTTTAT 49081 Query 19151 TCATACAATGGGGGATGCACA 19171 || || || |||||||| Sbjct 49082 CCACGTCATAGGCGATGCACA 49102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399477722249865