Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq41 226 3e-54 >seq41 Length=78637 Score = 226 bits (250), Expect = 3e-54 Identities = 408/588 (69%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || || ||||||||||| || || ||||| || || || | ||||||||| || || || Sbjct 49129 AGCGGTTCCACGTGGTTCAGATACACGTGTGCATCGCCTATGACGTGGATAAACTCGCCA 49070 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || || | || || || | || | || || || | ||||||||| ||||| Sbjct 49069 GGCTTCAGTCCAGTCACCTGCGCTACTA-GTCGCGTTAGAAGCGCGTAGCTGGCAATGTT 49011 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| || || || || |||||||| | ||||||||||||| |||||| || | |||||| Sbjct 49010 GAAAGGGACGCCGAGTCCCATGTCGGCAGAGCGCTGGTACATCTGGCAAGACAACTCCCC 48951 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | |||||||| |||||||| | | |||||| || ||||| ||||| || || || Sbjct 48950 GTCGGCCACGTAAAACTGGCAGAACATGTGGCATGGTGGCAGCGCCATCTCGTTGAGATC 48891 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 || |||||||| || | ||| || | || | | | |||||| | | || Sbjct 48890 AGCTGGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 48831 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 |||| || |||||||||||||||||| || | ||| || | | || | | | || Sbjct 48830 AATCACCTCAGCGAGCTGGTCCACGCCCTGACCACTGTAGTCCG-CATGCATATTCGTGT 48772 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| |||||||| | ||||||||| ||||| || || || ||||| || |||| Sbjct 48771 ACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACCGGTCCGAGGTCGCCAACTTCCC 48712 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 | | ||| || | | | || | || || || || ||| |||||||||| | | Sbjct 48711 GATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCGATCCATTGCCGTCCCAGATGTGAA 48652 Query 146162 CGCCCCTC-GCGGAGAGCTCATTGGAGTCC--GTGGACCCCCTGATGAACCAGAGCAGCT 146218 | | || || | | | | ||| | ||| || || |||||||| ||||||| Sbjct 48651 TGTTCTTCTGCTGCAA---CGTGTGAGCGCTTGTGTCTCCGCTAATGAACCACAGCAGCT 48595 Query 146219 CTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | ||| || || | |||||| |||| |||||| ||||||| |||| Sbjct 48594 CCTCGGCCACACCTCGCCAGAACACCCGCTTGGTCGTCAGCAATGGGA 48547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590036991943880