Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq588 363 2e-95 seq1009 324 1e-83 seq312 152 5e-32 seq989 136 4e-27 seq1785 100 3e-16 >seq588 Length=22666 Score = 363 bits (402), Expect = 2e-95 Identities = 602/860 (70%), Gaps = 12/860 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || |||||||||| ||| |||||| | |||||||| || | | ||| Sbjct 20975 GAGCCGTTCCTCGTCGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCCAGGAGCACGAC 21034 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||| ||||| || |||||||| | ||||||| | ||| || Sbjct 21035 GTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTCGACTTG 21094 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | ||| | ||||||| | | | | |||||||||| || |||||||||||| Sbjct 21095 GTGCACGACCTCAATGACTGGGCGAACCTCACGAACAACGAGCGTCACTTCATCAAGCAC 21154 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 |||||||| || || || ||||||||||| ||||| |||||||| |||| | | ||| Sbjct 21155 GTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTC 21214 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || ||||||||| | ||||| || |||||||||||||| ||||||||||| ||| Sbjct 21215 AGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 21274 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG--G 116933 ||| | |||||||| | || ||| ||||| ||||||||| | ||| | | Sbjct 21275 AACATCCACTCGGAGGTCTACTCGCTGCTCATTGACACGTACAT--CAAGGACGGTGTCG 21332 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||| || || || ||||||||||| || |||||||||| |||| || | | Sbjct 21333 AGAAGGACCACCTGCTGCGTGCCATCGAGACCATCCCGTGCGTCACGAAGAAAGCTCACT 21392 Query 116994 GGGCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||||| | ||| || || || | | | || ||| | ||||| ||| ||||||| Sbjct 21393 GGGCGCTCAGGTGGTGCGACCCGC-GTGTGTCCTCCTACCCGGAGCGTCTGCTGGCCTTT 21451 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || ||||| ||||| ||||||| |||||| ||| | | || || ||||||||||| Sbjct 21452 GCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAG 21511 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||||||||||||||| || | ||| || ||||||||| | | |||||||| || Sbjct 21512 CGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCATCAGCCGTGACGAGGGCATG 21571 Query 117173 CATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 || |||||| || || | || | ||||| | ||| ||| | | || Sbjct 21572 CACACCGACTTCGCTTGCCTCATGTACTCCAAGCTGATCAACAAGCTGCCG-GAAAGCCG 21630 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 || | || ||||| || |||||| || | || ||||| ||| | ||| || Sbjct 21631 CGTG-CA-CGAGATTGTGCGCGACGCTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCG 21688 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || |||||| || | || | || | | |||| ||||||||||||||||| Sbjct 21689 CTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTG 21748 Query 117350 GCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTG 117409 |||||| | |||||| | ||||| || | ||| ||||||| | |||||| | Sbjct 21749 GCCGACCGCCTGCTGTACTCGCTGGGCGTGTCTAAGATCTACAACGCCAAGAACCCGTTC 21808 Query 117410 GACTTTATGAACCTCATCTC 117429 |||| ||| || | ||||| Sbjct 21809 GACTGGATGGACATGATCTC 21828 >seq1009 Length=13826 Score = 324 bits (358), Expect = 1e-83 Identities = 561/805 (70%), Gaps = 24/805 (3%) Strand=Plus/Minus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 ||| |||||| | |||||||| || | | ||| |||||| |||||||| |||||||| Sbjct 4214 CCGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGA 4155 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCG 116721 ||| || |||||||| | ||||||| | |||||| | ||| | |||||||| | Sbjct 4154 GGCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTGCACGACCTCAACGACTGGGCGAA 4095 Query 116722 CTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGA 116781 | | |||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 4094 GCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGA 4035 Query 116782 CGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGC 116841 |||||||||||| |||||||||| | | ||| | || ||||| ||| ||||||| Sbjct 4034 CGGCATCGTCAATGAGAATCTGGCCATGAACTTCAGCAACGAAGTGCAAGTGCCCGAGGC 3975 Query 116842 GCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGAC 116901 || ||||||||||| || ||||||||||| |||||| | |||||||| | || ||| Sbjct 3974 TCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCT 3915 Query 116902 CCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCAT 116958 ||||| ||||||||| | | | | |||| |||| | || | || || || Sbjct 3914 GCTCATTGACACGTACATCAAGGACACCGTGGAGAAGAACCACC---TCCTGTGTGCTAT 3858 Query 116959 CGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG-CCGGCA 117017 ||| ||||| ||||||||| | |||| ||| | ||||| || ||| || || || Sbjct 3857 CGAAACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGC- 3799 Query 117018 GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT 117077 | | | | ||| | ||||| ||| |||| || || | || |||||| ||||||| | Sbjct 3798 GTGTGTCGTCCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCT 3739 Query 117078 CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTT 117137 ||||| || | | | || ||||||||||| |||||||||||||| || || | | Sbjct 3738 CGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCT 3679 Query 117138 TCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTG- 117196 || |||||| | ||| | |||||||| |||| || || || || | || Sbjct 3678 TCTCGAACGAGATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGT 3619 Query 117197 --TTCAAGCATTTGGTG---CAGC-GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 | ||||| ||||| ||| | | ||| || || ||| |||||||| | Sbjct 3618 ACTCCAAGC---TGGTGAACAAGCTGCCGGAGAGC----CGAGTCCACGAGATCGTGCGC 3566 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 ||||| || || ||||| ||| || ||| |||| |||||| ||| | || Sbjct 3565 GACGCTGTGAAGATTGAGCACGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGC 3506 Query 117311 CTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGA 117369 | || | ||| | |||| || |||||||||||||| || ||| | |||||| | Sbjct 3505 ATGAACT-CGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTC 3447 Query 117370 GCTGGTCGGCGCCAAGCACTACAAC 117394 ||||| | ||||| ||||||| Sbjct 3446 GCTGGGTGTGTCCAAGATCTACAAC 3422 >seq312 Length=34779 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 24879 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24938 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | ||||| Sbjct 24939 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24997 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 24998 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 25057 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || || |||| || | ||||| Sbjct 25058 CATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGG 25105 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || |||||||| || ||||| | ||||| || | Sbjct 24192 AAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCG 24251 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | || Sbjct 24252 TCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGA 24310 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 24311 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 24370 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||||||||||| | |||||||| || || |||| || | || ||| Sbjct 24371 CAATATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24422 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 24423 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24482 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | ||||| Sbjct 24483 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24541 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 24542 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24601 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | |||||||| || || |||| || | || ||| Sbjct 24602 TATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24650 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 24651 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24710 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | ||||| Sbjct 24711 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24769 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 24770 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24829 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | |||||||| || || |||| || | || ||| Sbjct 24830 TATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24878 >seq989 Length=14097 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 1158 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 1217 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 1218 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1277 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 1278 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 1337 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 1338 ATCCAGAAGG 1347 >seq1785 Length=6806 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1781 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 1840 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||||||||||||||||||| | || ||||| || ||| |||| Sbjct 1841 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCG 1893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184442024720