Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1233 248 2e-60 seq126 152 1e-31 seq1009 105 1e-17 seq588 98.7 2e-15 seq5216 86.0 1e-11 >seq1233 Length=11135 Score = 248 bits (274), Expect = 2e-60 Identities = 1084/1699 (64%), Gaps = 67/1699 (4%) Strand=Plus/Plus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| || || || || |||| |||||||| || ||||| Sbjct 6009 ATGTACGTCATCAAGCGCGATGGCCGTCGCGAGGACGTCAAGTTCGACAAGATTACGGCG 6068 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCC 248538 ||||||| |||||||| || || ||| | || ||| ||| || || ||| | Sbjct 6069 CGCATCACCAAGCTCTGCTACGGGCTGAACCCGGACTACGTGGACGTCGTCAAGATCTCG 6128 Query 248539 CAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCT 248598 ||||| || | ||||||| ||| | || || || ||| | || |||||| | || Sbjct 6129 CAGAAGGTCGTGGCGGGCGTGTACCCAGGCGTGACCACGTCCGAGCTGGACGAGCTGGCC 6188 Query 248599 GCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | | Sbjct 6189 GCCGAGACGGCCGCGTACCAGAGCAC-GCAGCACCCGGACTTCTCCAAGCTGGCGGCGCG 6247 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGA 248717 |||||||| || | || ||||| | ||||| || ||| ||| | ||| | | Sbjct 6248 CATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTTTTCAGCGAGAACATCGAGGT 6307 Query 248718 CCTACAT--------GC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | || || | | || || ||||||||||||| Sbjct 6308 TTTTCACAAGAACGCGCACGAGAAGACGGGGGCGGCTGCGCCGCTCATCGCCGATGACGT 6367 Query 248751 CCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 || | |||||| ||| |||| | | ||| || || || | ||| | Sbjct 6368 ATACGCGCTCGTCATGCAGCACAAGGACGAGCTCA---ACTCGGCAATCATCCACGACCG 6424 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || |||||||| | ||| | ||||| ||||| ||| || ||| || | Sbjct 6425 CGACTTCGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGCGGCTACCTCTTCCGCGT 6484 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| | ||||| || ||||| ||| | ||||| ||||| | || || || Sbjct 6485 GCAGGGGAAGGTGGTGGAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCA 6544 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||| ||||| || || ||||||||||||| ||||| | | | || Sbjct 6545 CAAGGGCGACATCCAGGCCGCGCTCGAGACGTACGAGCTCATGAGCCAGAAGTTCTTCAC 6604 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGT 249043 || || || || ||||||||||||||||| || |||| |||||| |||| Sbjct 6605 GCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTC----CGCAGCTGTCGTCGT 6660 Query 249044 GCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 |||| || || |||||||| |||||||| |||| ||||| || |||||||| || ||| Sbjct 6661 GCTTCCTGCTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGT 6720 Query 249104 CGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA 249163 ||| || || || | || ||||| ||||| || | | ||||||||| || | Sbjct 6721 GCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCCA 6780 Query 249164 AGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCG 249221 |||||| ||| || || || ||| |||| ||| | ||| | || || Sbjct 6781 CCAACAGCTACATCCGAGGCACGAACGGCTCGTC--CAATGGGATCATCCCCATGCTGCG 6838 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTT 249278 || | ||| || | | | | |||||| ||| || || ||||| ||||| Sbjct 6839 CGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTT 6898 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAA 249338 |||||| || |||| |||||||||||| | || |||||||||||| | ||||| Sbjct 6899 CGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAA 6958 Query 249339 CAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTT 249398 | ||||||||||||| | ||||| ||||| ||||||| || |||||| |||| | Sbjct 6959 CCACGGCAACGAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCT 7018 Query 249399 GTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGC-CC 249457 |||||| | ||| || || | ||| | |||| || | | || ||| || || Sbjct 7019 CTTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCC 7078 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCA 249517 |||| || ||| || | ||| || || ||| |||| ||||| | Sbjct 7079 CGGA-CTGTACGAGTGCTGGGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAGACGG 7137 Query 249518 ACGGC---ATCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGT 249571 | ||| | ||||||| || || || | | || || || | | |||| Sbjct 7138 AGGGCCGGGCCCGCAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCA---TCCTGGACG 7194 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 ||||||| ||||| |||| ||| | | || ||| ||| |||||| |||| |||| Sbjct 7195 CCCAGATCGAGACGGGGGTGCCCT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGTCC 7253 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATA 249689 ||||| | | | || || |||||||||||| || | || ||| ||||| || | || Sbjct 7254 AACCAGCAGAACCTGGGCACCATCCGCTCGAGCAACTTGTGCTGC-GAGGTCATGGAGTA 7312 Query 249690 CTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCACGT 249749 | |||| || ||| | || || ||||||||||| | || | | ||| Sbjct 7313 CACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCGGTGGCCCTGCCCAAGTTCGT 7372 Query 249750 GAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGATCAA 249809 | || |||| | |||| ||| | || || || | || || || || | Sbjct 7373 GGAGGAGGACGGTGTGTTCAACTACCAGAAGCTGTACGAGGTGGTAAAGGTGGTGACCCG 7432 Query 249810 AAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATGCAGGTTGTCCAA 249869 |||||||||||||||||||||||||| | |||||| | | ||| | |||||| Sbjct 7433 CAACCTCAACAAGGTGATTGATGTCAACTACTACCCCGTGGCGGAGGCGCGCAAGTCCAA 7492 Query 249870 CATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGAT 249929 |||| ||||| || ||| | || || |||| ||| ||||| | ||| |||| Sbjct 7493 CATGCGCCACCGCCCGGTGGGGATCGGTGTGCAGGGTCTGGCCGACGCGTTCATTCTGAT 7552 Query 249930 GGGATTCCCCTTCGAGTCAGAGGAGGC-AGCGACGCTAAATAAACAGATTTTCGAGACCA 249988 | | | | |||||| ||| |||| | || ||| || | | || |||||||||| Sbjct 7553 GAACTACGCGTTCGAGAGCGAGCAGGCTCGTGA-GCTCAACATGAACATCTTCGAGACCA 7611 Query 249989 TCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATACGAGA 250048 |||| ||| | | ||| |||| || || | |||||| || || ||||||| Sbjct 7612 TCTACTACGCTTCCATGGAGACGTCGATGGAGATCGCCAAGGAGCTTGGCCCGTACGAGA 7671 Query 250049 GTTTTCAGGGGTCGCCCGC 250067 || ||||| ||||| || Sbjct 7672 CGTTCCAGGGATCGCCTGC 7690 >seq126 Length=52138 Score = 152 bits (168), Expect = 1e-31 Identities = 270/389 (69%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || ||||| ||||| ||| |||| ||||| || || ||||||||||| || || Sbjct 45906 TGGCCAGCTGCCTCACTTGCTGTTCTACGGACCTCCGGGCACGGGCAAGACGTCCACGAT 45847 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || ||| || | | ||| | |||| | || || Sbjct 45846 TGTGGCGGTGGGGCGCCAGCTCTTTGGCCCGGACTTCCGCAAGAGCGGGCGCTTCCTGGA 45787 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||| ||||| || || || ||||| | | || || ||||| ||| |||||| ||| | Sbjct 45786 GCTTAACGCGTCGGATGACCGCGGCATCAAGGTGGTGCGCGAGAAGGTCAAGAGCTTCGC 45727 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || || | | | | ||| ||||| || ||| || | | ||||| Sbjct 45726 CCAG--GGCGCCATCAGCAGCGCCAGTGGCCTG-CCGCCCTTTAAGATCATCGTACTGGA 45670 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||||||||| || || || || | |||||||| | Sbjct 45669 TGAGGCCGACTCCATGACGGGCGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTA 45610 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCG 254348 |||| || ||||| || ||||| | || ||||||||| ||| | |||| | || Sbjct 45609 CTCCAAGGTCACGCGCTTCTGCCTCATTTGTAACTACGTGAGTCGCA--TCATTGAGCCC 45552 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||| || || ||||||||||| || || Sbjct 45551 GTGGCCTCGCGATGCGCCAAGTTCCGCTT 45523 >seq1009 Length=13826 Score = 105 bits (116), Expect = 1e-17 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | |||| || ||||||||||| |||||||| || ||||||||||| Sbjct 3341 GTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 3400 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||| | |||||| | |||| |||||| || |||| Sbjct 3401 CCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACG 3460 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| ||||| |||| |||||||| |||| | || | | || ||||| ||| | || Sbjct 3461 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 3520 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGT 157481 || |||| | || | | ||| ||| ||||| | ||||||| Sbjct 3521 CGGGAGCG-AGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGT 3564 >seq588 Length=22666 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 21888 ACGCCCGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 21829 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTAC-CCCA 157361 || |||||||||||||| ||||| ||||| | |||||| | ||| | | || |||| Sbjct 21828 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGAC--ACGCCCA 21771 Query 157362 GCTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTA 157398 || || |||| | ||| ||||| |||| |||||| Sbjct 21770 GCGAGTACAGCAGGCGGTCGGCCACGAACTCGATGTA 21734 >seq5216 Length=1695 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 ||||| || || |||||||| ||||| |||||||||||| | || |||||| || ||| Sbjct 360 CTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCATTGCGAACCGAGTGGTG 419 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGC--CTGGAAAGCACCAGGTGTCATCGAGT 115531 |||| | | ||||| | || ||||| || |||| || ||| ||||| |||| Sbjct 420 GCCGAGAAGATCTCCATAGTGCGACGCAGGGCTGCTGG---GCCGCAGCCGTCATGGAGT 476 Query 115532 CTGCCTCGTCGAGAACGACAATCTT 115556 | |||||||| || | ||| ||||| Sbjct 477 CGGCCTCGTCCAGGATGACGATCTT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073692150060096