Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq41 181 9e-41 >seq41 Length=78637 Score = 181 bits (200), Expect = 9e-41 Identities = 315/456 (69%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| |||| ||||| | || | ||||| | | || || || |||||||| || Sbjct 49166 CGGGAACGAGCGCGGTGCCCGCGTTAGCTGCTTCTGAAGCGGTTCCACGTGGTTCAGATA 49107 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| || || || | | ||| | ||| || || || |||| || || || || || Sbjct 49106 CACGTGTGCATCGCCTATGACGTGGATAAACTCGCCAGGCTTCAGTCCAGTCACCTGCGC 49047 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || ||| || || ||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 49046 TACTAGTCGCGTTAGAAGCGCGTAGCTGGCAATGTTGAAAGGGACGCCGAGTCCCATGTC 48987 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| |||||| |||| |||||| |||||||||||||| || || Sbjct 48986 GGCAGAGCGCTGGTACATCTGGCAAGACAACTCCCCGTCGGCCACGTAAAACTGGCAGAA 48927 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || || || |||||| ||| || || ||||||||||| | | || Sbjct 48926 CATGTGGCATGGTGGCAGCGCCATCTCGTTGAGATCAGCTGGGTTCCACGCAGAGAGCAC 48867 Query 21188 GATGCGCCGAT-CGTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 || || || | ||| || || || ||| ||| |||| | | || || Sbjct 48866 AATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGAAT------CACCTC--AGCG-AG 48816 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| |||||||| ||||| || | | |||||| || || || || Sbjct 48815 CTGGTCCACGCCCTGACCACTGTAGTCCGCATGCATATTCGTGTACTTGGCACCGAAGTG 48756 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | ||||||||| ||||||||||| || || ||||| Sbjct 48755 ACGCCACTGGAAGCCGTACACCGGTCCGAGGTCGCC 48720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427747862632560