Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1009 168 1e-36 seq588 156 6e-33 >seq1009 Length=13826 Score = 168 bits (186), Expect = 1e-36 Identities = 417/627 (67%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | ||||||||||| ||||| |||||||| | ||| || | ||||| || | Sbjct 3619 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 3678 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | |||| || ||||| ||||| ||||| || ||||| || | || ||| || || | Sbjct 3679 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 3738 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGGC 50126 | |||||||| || || || | |||||| || | || | ||| || || | Sbjct 3739 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 3798 Query 50127 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 || | || | | |||||| | ||||| | ||| ||||| | || || || ||||||| Sbjct 3799 GCGGGTC--GCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTT 3855 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || ||| | ||| | ||| || || | || || | || || || || | | Sbjct 3856 CGATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCA 3915 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 | || | ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 3916 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAG 3975 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCC 50363 |||||| | |||||||| | | || ||||| || | ||| ||||| || || || Sbjct 3976 CCTCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCC 4033 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 ||||||||| || || || || | || || || || || || |||||| || || Sbjct 4034 GTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 4093 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || ||| || |||| || | | || | || || | ||||| || || || Sbjct 4094 CTTCGCCCAGTCGTTGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGC 4153 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||| ||||| || ||||| | ||| | ||| || | ||||| ||||| | || || | Sbjct 4154 CTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCG 4213 Query 50544 ATTTGGATTTGGTGCAAGGATCGGTTC 50570 || ||||| || | |||| ||| || Sbjct 4214 GTTCGGATTCGGGACGAGGAACGGCTC 4240 >seq588 Length=22666 Score = 156 bits (172), Expect = 6e-33 Identities = 393/589 (67%), Gaps = 15/589 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | || ||||| ||| ||||| |||||||| | || || || || || || | Sbjct 21596 ACATGAGGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGA 21537 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| |||||||| ||||| ||||| || ||||| || || || ||| || || || Sbjct 21536 AGCTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAAGGAGCCC 21478 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGG 50125 || |||||||| || || || ||||||||||| | || | ||| || || Sbjct 21477 GAGAAGAAGATCCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACA 21418 Query 50126 CGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 ||| ||| | | |||| | | ||||| | || ||||| | || || || || || Sbjct 21417 CGCGGGTC--GCA-CCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTC 21361 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || |||||| | || | || || || || || || | || || || || | Sbjct 21360 TCGATGGCACGCAGCAGGTGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGC 21301 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || || | ||||| || ||||| || ||||| ||||| || |||||||| || | | Sbjct 21300 AGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGA 21241 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTC 50362 ||||| | | ||||||||| | | || ||||| || | || || ||||| || | Sbjct 21240 GCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATAC 21183 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 |||| ||||| ||||| || |||| || || || || || || |||||| || | Sbjct 21182 CGTCGCTGGCAGCAAAGAAAGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGA 21123 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | || ||| ||||||| || | | || | || || | ||||| || || | Sbjct 21122 GGTTCGCCCAGTCATTGAGGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGG 21063 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||| ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 21062 CCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 21014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718220343791080