Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1009 196 7e-45 seq588 179 5e-40 seq1233 145 1e-29 seq41 104 3e-17 seq422 102 1e-16 >seq1009 Length=13826 Score = 196 bits (216), Expect = 7e-45 Identities = 586/889 (66%), Gaps = 38/889 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| | |||||||| ||||| |||| ||||| Sbjct 4204 CTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTC 4145 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| |||| ||| | ||||| |||| |||| || | | || Sbjct 4144 TGGACGGCCGAGGAGCTCGACCTGGTGCACGACCTCAACGACTGGGCGAAGC---TCACG 4088 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | | |||||||| || | | || || ||| Sbjct 4087 GACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGACGGCATC 4028 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCG- 125231 ||||| || |||||| | || || || ||| || || | || |||| ||| Sbjct 4027 GTCAATGAGAATCTG--GCCATGAACTTCAGCAACGAAGTGCAAGTGCCCGAGGC-TCGC 3971 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| ||||| ||| || |||||| | |||||||| | ||||| || Sbjct 3970 TGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTC 3911 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGT-------AAACACATGCTCTTTAACGCAAT 125344 ||||||| |||||| || || ||| || ||| | || | | || || Sbjct 3910 ATTGACACGTACATCAAGGA----CACCGTGGAGAAGAACCACCTCCTGTGT---GCTAT 3858 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 ||| ||| | |||| | | || || || | |||| | |||| ||| Sbjct 3857 CGAAACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCG 3798 Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 ||| || ||| | || | ||| |||| || ||| | || |||||||||||||| || Sbjct 3797 TGTGTCGTCCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTC 3738 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | |||||| | |||| ||||||||||||||||| |||||||| || || | Sbjct 3737 GGGCTCCTTTTGCT-CGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCT 3679 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || ||| ||||||||| | ||| || || || || ||| Sbjct 3678 TCTCGAACGAGATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGT 3619 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 ||| ||| | || ||| | || | || ||| | | || || Sbjct 3618 ACTCCAAG---CTGGTGAACAAGCTGCCGG---AGAGCCGA----GTCCACGAGATCGTG 3569 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGAT 125701 ||| || |||| ||| || || ||||| | ||| || || ||||| ||| |||| Sbjct 3568 CGCGACGCTGTGAAGATTGAGCACGAGTTCGTCTGCGACTCGCTCCCGGTGGAGC-TGAT 3510 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 |||||||||| | ||| |||||| ||||||| ||||| ||||| || ||||| ||||| Sbjct 3509 CGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTA 3450 Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | | || || |||||| ||||||| |||||| || || || | ||| || || Sbjct 3449 CTCGCTGGGTGTGTCCAAGATCTACAACGTCAAGAACCCATTCGACTGGATGGACATGAT 3390 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||| ||||||||||| ||||||| | || |||||||| Sbjct 3389 CTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGGGCGAGTAC 3341 >seq588 Length=22666 Score = 179 bits (198), Expect = 5e-40 Identities = 584/891 (66%), Gaps = 42/891 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| | |||||||| ||||| |||||||||| Sbjct 21011 CTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTC 21070 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| |||| || | ||||| | || |||| || | | || Sbjct 21071 TGGACGGCCGAGGAGCTCGACTTGGTGCACGACCTCAATGACTGGGCGAACC---TCACG 21127 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | | ||||| | || || |||| | |||| |||||||| | | ||| || ||| Sbjct 21128 AACAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATC 21187 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCG- 125231 || ||||| || ||| | || || || ||| || || | || |||| ||| Sbjct 21188 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGC-TCGC 21244 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| ||||| ||| || |||||| | |||||||| | ||||| || Sbjct 21245 TGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTC 21304 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAA----CACATGCTCTTTAACGCAATCGA 125347 ||||||| |||||| || | | || || ||| |||| | || ||||| Sbjct 21305 ATTGACACGTACATCAAGGA-CGGTGTCGAGAAGGACCACCTGCTGCGT---GCCATCGA 21360 Query 125348 CACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 || | |||| | ||| | |||| |||| |||| | | ||||| ||| Sbjct 21361 GACCATCCCGTGCGTCACGAAGAAAG-CTCACTGGGCGCTCAGGTGGTGCGACCCGCGTG 21419 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| || ||| | || | ||| |||| || |||||||| ||||| |||||||| |||| Sbjct 21420 TGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGG 21479 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || ||| | ||||| ||||||||||||||||| ||||||||||| || | | Sbjct 21480 GCTCCTTCTGCT-CTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTC 21538 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 || ||| | || || ||||||||| | ||| ||||| || || ||| Sbjct 21539 TCGAATGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGT-- 21596 Query 125586 CGCAACTATCTGCGTCCCGAG-TGCAGATCCAGC-GATGAAAAG----GTCATCAACATT 125639 ||| || || || | | ||| | | |||| || | | ||| Sbjct 21597 ----ACT---------CCAAGCTGATCAACAAGCTGCCGGAAAGCCGCGTGCACGAGATT 21643 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATG 125699 || ||| || ||| ||| || || ||||| | ||| || || ||||| || Sbjct 21644 GTGCGCGACGCTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTG 21703 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || || ||||||| ||| |||||| | ||||| ||||| ||||| || || || ||| Sbjct 21704 ATCGGTATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTG 21763 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 ||| | || | ||||| |||||||||||||| || || || | ||| || Sbjct 21764 TACTCGCTGGGCGTGTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATG 21823 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||||||||| ||||||||| || |||||||| Sbjct 21824 ATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 21874 >seq1233 Length=11135 Score = 145 bits (160), Expect = 1e-29 Identities = 326/483 (67%), Gaps = 10/483 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| |||| || |||||||| ||||| || || || | || | ||||| ||| Sbjct 6900 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAAC 6959 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | |||| | || | ||| |||| || || |||||||| || ||| | Sbjct 6960 CACGGCAACGA-GCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCT 7018 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 ||||||||| | ||| | | |||| | |||||||| | |||||| || | || Sbjct 7019 CTTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCC 7078 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA 97144 ||| |||| ||| |||||||| || |||||||||||| ||| | |||||| || Sbjct 7079 CGGACTGTACGAGTGCTGGGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAGACGGA 7138 Query 97145 GGGCC-GATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 ||||| | || |||| | | | || | | |||||| |||||| || || | Sbjct 7139 GGGCCGGGCCCGCAAGACCA-TTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCCC 7197 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || || | ||| || |||||||| | | || ||||| ||||| Sbjct 7198 AGATCGAGACGGGGGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACC 7257 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACG 97320 | | || ||||||||||| |||| ||| ||||| || | | |||||| Sbjct 7258 AGCAGAACCTGGGCACCATC---CGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACA 7314 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAG 97380 | || || || ||| ||| || ||| ||||| ||||| ||||||||||| || | Sbjct 7315 CGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCGGTGGCCCTGCCCAAGTTCGTGG 7374 Query 97381 AGG 97383 ||| Sbjct 7375 AGG 7377 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || || | || || |||| ||| | ||| Sbjct 8049 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCGGTGCTGGACCTGTCTGCTGACCGTGGT 8108 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || ||||||| || ||| || Sbjct 8109 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATTGCCGACCCGACCATTAGCAAG 8168 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | ||||| || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 8169 CTTACTTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 8224 >seq41 Length=78637 Score = 104 bits (114), Expect = 3e-17 Identities = 275/411 (67%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT--GTAG 70124 ||||| || || || |||||||| ||||||||| | |||| || ||||||| | | Sbjct 48720 GGCGACCTCGGACCGGTGTACGGCTTCCAGTGGCGTCACTTCGGTGCCAAGTACACGAAT 48779 Query 70125 ACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACT 70183 | ||| | | ||||| |||||||| || || || | || || | ||| ||| Sbjct 48780 A-TGCATG-CGGACTACAGTGGTCAGGGCGTGGACCAGCTCGCTGAGG-TGATTCACAAG 48836 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 || || || || || || | |||| || | | | ||||| || || ||| | Sbjct 48837 CTGCGTACGAACCCGACGGACCGCCGGATTGTGCTCTCTGCGTGGAACCCAGCTGATCTC 48896 Query 70244 CACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAA 70302 || | ||||| || ||||| || ||| |||| || ||||||||| | ||| || | Sbjct 48897 AACGAGATGGCGCTGCCACCATGCCACATGTTCTGC-CAGTTTTACGTGGCCGACGGGGA 48955 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 ||||| ||| ||||| ||| | |||||||||||| ||||| || || || ||||| Sbjct 48956 GTTGTCTTGCCAGATGTACCAGCGCTCTGCCGACATGGGACTCGGCGTCCCTTTCAACAT 49015 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 ||| ||||| | | | |||| | | || || | || || ||||| | ||| Sbjct 49016 TGCCAGCTACGCGCTTCTAACGCGACTAGTAGCGCAGGTGACTGGACTGAAGCCTGGCGA 49075 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 ||| | ||| ||| ||||| || ||||||||| | || ||| | || || Sbjct 49076 GTTTATCCACGTCATAGGCGATGCACACGTGTATCTGAACCACGTGGAACC 49126 >seq422 Length=29528 Score = 102 bits (112), Expect = 1e-16 Identities = 214/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| ||||| || || |||||||| | ||||||| Sbjct 16863 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAAGTCCAGGCCCATGATGCGGTCGTGCGG 16804 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| || ||||| |||||||||||| || || || Sbjct 16803 GCGCAGCAGAGCCGTGTACACGGCGAAATTGGCGGGCGAGCCCGAGTAGGGCTGCACGTT 16744 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||| || | | || | ||| |||||||| || | Sbjct 16743 GACGCCCCACTTGTCAGCGTCCAGGCCGTAGGCCGTCAGAGCGCGCTGCTGGCACAGGAT 16684 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 16683 CTCGATCTTGTCGATGACCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 16626 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| |||| ||||| | || ||| || || | | | ||| ||||| Sbjct 16625 GCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCGCGCGAGGTGAAGTTC 16566 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 16565 TCCGAGGCGATGAGCTC 16549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741009206293720