Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq844 145 7e-30 >seq844 Length=16701 Score = 145 bits (160), Expect = 7e-30 Identities = 239/345 (69%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| || ||| ||||| ||||| ||||| | |||| || || | | |||||| Sbjct 10349 CACTCCGGTGCTGCCGAAGCCGCCAGCGCCGCGCGCCGTCTCCTCGATCTCCTGCACCTC 10408 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | ||| || ||| || | |||| ||| |||||||||| |||||||| ||| Sbjct 10409 CTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCTACGCGGTCGCCGCGCTT 10468 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || ||| || | | | ||||||||| | |||||||||||||||||||||||| Sbjct 10469 CACGGGGAAGTCCTCGCTCGAGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTC 10528 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| || ||||| |||||| ||||||||| | ||| ||| ||||| ||||| || Sbjct 10529 TGCGTCGATGACGCCTGCGCCCGTGTCGATGAACTTCTTCCACGCGAGGCCCGAGCGAGG 10588 Query 5740 AGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCG 5799 |||||||| ||||||| || ||||| | || |||||||| || | | Sbjct 10589 CGCCACGCGCGCGTAGCAGCCGTCGGGCACAGCGATGATGAGGTCCGTCTTGACGAGGCC 10648 Query 5800 CCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | |||||||| ||||||| | |||| | ||| ||||||| Sbjct 10649 CTTGCCGCCCGCCGGGACGACGGCGTCGTAGGCGGCCGAGAGGTC 10693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430026112768664