Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq292 150 3e-32 seq343 145 1e-30 seq2734 105 1e-18 seq498 95.1 2e-15 seq2633 80.6 4e-11 >seq292 Length=79556 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 42571 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 42512 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || ||||| || || |||||| |||| || || |||| || |||| Sbjct 42511 CCGTCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 42452 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 42451 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 42392 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 42391 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGG 42332 Query 16672 CCG 16674 ||| Sbjct 42331 CCG 42329 >seq343 Length=36332 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 30576 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 30635 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || |||||||| |||| || | |||| || |||| Sbjct 30636 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 30695 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| || |||| || | || ||| ||||| Sbjct 30696 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAATGTCATCCGCGACTCGGTCACCTACACCGA 30755 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || ||||| || ||||||| |||| || || | || || || || Sbjct 30756 GCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGG 30815 Query 16672 CCG 16674 ||| Sbjct 30816 CCG 30818 >seq2734 Length=3514 Score = 105 bits (116), Expect = 1e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 3362 CGCTAAGCGTCACCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 3421 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || || |||||||| || || || |||| || | |||| || |||| Sbjct 3422 CCGTCGACTCGCGCGCCGTGGTGGCGTGAAACGCATCTCCGGTCTCATCTACGAGGAGAC 3481 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | || | ||| |||||||| ||| ||| Sbjct 3482 TCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGT 3514 >seq498 Length=26203 Score = 95.1 bits (104), Expect = 2e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || | ||| |||||||||||||||||| | | ||||| | || ||||| || | | Sbjct 3246 CTACGCGCTAATATCCAAGGAATCACCAAGGCTTCAATCCGCAGGCTTGCTCGGCGAGCT 3305 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| | ||| | ||||| ||||| ||| | || | | ||| || | ||||| || Sbjct 3306 GGAGTGATCCGTATGTCTGGCTTGGTGTATCACGAAACTGGTGCCGTAATAAAGATTTTT 3365 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || ||| | |||| | ||| || ||||||| || || ||||| ||| Sbjct 3366 GTATAAAATCTTGTCCGCGCTGCTGTTGTCTACACGCAGCACGCGAATCGGAAGACAGTC 3425 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || || || | || || || ||||| | | | || || || ||| Sbjct 3426 ACCACAATGGATGTTGTATACGCTCTCAAGCGCCAGGGCCGCACGCTATACGGATTCGGA 3485 >seq2633 Length=3734 Score = 80.6 bits (88), Expect = 4e-11 Identities = 176/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAG-ATAACATCCAAGGAATCACCAAGCCAGCT 16489 ||| ||||| || ||| | ||| || || | |||| || |||||||| | || || | Sbjct 3254 CGCGAAGCGCCACCGCTACATC-CTACGGGGATAATATTCAAGGAATAAGCAGACCGTCC 3312 Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||||||||| |||| || | | |||| || | || | | ||||| || Sbjct 3313 ATCCGTCGTCTTGCTCTGCGGGAAGAGGTCATCCGCATGTCCGACGTTATCTATAGCGAA 3372 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | ||||| ||| ||||| | || |||| | | |||| | ||||| | ||| | Sbjct 3373 ACTCGTGCGGTTCTGAAGGTATTTGTCAAAAACCTTATTCGAGATGCGGTGGTCTACGCA 3432 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||| || || || ||||| ||||| || | |||| | || |||||| | || | ||| Sbjct 3433 GAGCATGCCAACCGAAAGACAGTCACGTCGAGGGATGTTGTGTATGCACTAAACCTCCAA 3492 Query 16670 GGCCGTAAGATTTATGGTTT 16689 ||||| | | |||| || || Sbjct 3493 GGCCGAACGCTTTACGGGTT 3512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070265485121