Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1233 322 1e-82 seq41 104 6e-17 >seq1233 Length=11135 Score = 322 bits (356), Expect = 1e-82 Identities = 878/1337 (66%), Gaps = 12/1337 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || || | | ||| || || || | ||| ||| |||| || Sbjct 6600 TTCACGCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 6659 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| ||||||||||| |||| ||||| || ||| | Sbjct 6660 TGCTTCCTGCTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 6719 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || ||||| || || | || ||||| | || || Sbjct 6720 TGCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 6779 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || |||||| | | |||||||| || Sbjct 6780 ACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCTGCGC 6839 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || ||| | ||||| |||||||| || || |||||||| || |||| Sbjct 6840 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTC 6899 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || || ||||| || ||| Sbjct 6900 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAAC 6959 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || || ||||| | || | Sbjct 6960 CACGGCAACGAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTC 7019 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | || ||| | | || ||| || || ||||| ||||| ||| Sbjct 7020 TTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCC 7079 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| ||||| ||||| | || || || ||||| ||||| || ||||| Sbjct 7080 GGACTGTACGAGTGCTGGGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAGACGGAG 7139 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || ||| || ||||| ||| ||| ||| |||| ||||| |||||| |||| | ||| Sbjct 7140 GGCCGGGCCCGCAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCCCAG 7199 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || |||| ||| ||||||| || || ||||||||||||||||||| Sbjct 7200 ATCGAGACGGGGGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAG 7259 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | ||||||| | || |||| | || || ||||| | Sbjct 7260 CAGAACCTGGGCACCATCCGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACACGTCG 7319 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAA 364323 ||||| ||| || || || ||||| |||||| | || || || ||| || | Sbjct 7320 CCCGATGAGGTGGCGGTGTGCAACCTGGCGTCGGTGGCCCTGCCCAAGTTCGTGGAGGAG 7379 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || ||| || || ||||| | || || || || | | || |||| ||| Sbjct 7380 GACGGTGTGTTCAACTACCAGAAGCTGTACGAGGTGGTAAAGGTGGTGACCCGCAACCTC 7439 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCG 364442 ||||||| || || || || || || | | | || || || || || ||||| Sbjct 7440 AACAAGGTGATTGATGTCAACTACTACCCCGTGGC-GGAGGCGCGCAAGTCCAACATGCG 7498 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || |||||| | || | ||||| ||||| || || |||| || || || | || Sbjct 7499 CCACCGCCCGGTGGGGATCGGTGTGCAGGGTCTGGCCGACGCGTTCATTCTGATGAACTA 7558 Query 364503 GGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || || | | ||||||| || || | | | ||||| || || || || | Sbjct 7559 CGCGTTCGA-GAGCGAGCAGGCTCGTGAGCTCAACATGAACATCTTCGAGACCATCTACT 7617 Query 364562 TTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 || | ||| | ||| || | || || || |||| || | Sbjct 7618 ACGCTTCCATGGAGACGTCGATGGAGATCGCCAAGGAGCTTGGCCCGTACGAGACGTTCC 7677 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 |||| || ||| |||| | |||||||| || | ||| ||||||| || | Sbjct 7678 AGGGATCGCCTGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGCATCACGCCTTC-G 7736 Query 364682 TC----CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 || | |||||||||| | |||| ||||| | || || || | ||| ||| Sbjct 7737 TCGGGTCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTGATTAAACACGGAATTCGGAAC 7796 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 || || | || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 7797 TCGCTTCTGGTGGCCCCCATGCCTACGGCTTCTACTGCTCAGATCCTGGGCAACAATGAG 7856 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 | | |||| |||| || || | || ||||| || ||| |||| || || || Sbjct 7857 TCCATCGAGCCGTACACGTCGAACATGTACAATCGCCGTGTGCTTGCCGGTGAGTTCACG 7916 Query 364858 GTAGTTAATAAGTACCT 364874 | || || |||||||| Sbjct 7917 ATCGTGAACAAGTACCT 7933 >seq41 Length=78637 Score = 104 bits (114), Expect = 6e-17 Identities = 387/598 (65%), Gaps = 14/598 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-A 111417 ||| || || |||||||| ||| ||||| |||| || | | |||||||| || | Sbjct 48590 CGAGGAGCTGCTGTGGTTCATTAGCGGAGACACAAGCGCTCAC-ACGTTGCAGCAGAAGA 48648 Query 111418 ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG--GTCTTGT 111475 | | | || ||||| || |||||||| || || | ||| || |||| | | || Sbjct 48649 ACATTCACATCTGGGACGGCAATGGATCGCGCGAGTATCTGGA--CAGTCGAGGACTGCA 48706 Query 111476 CGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGC 111535 || |||| || || |||||||| || ||||| || || ||||| ||||| ||||| Sbjct 48707 GGATCGGGAAGTTGGCGACCTCGGACCGGTGTACGGCTTCCAGTGGCGTCACTTCGGTGC 48766 Query 111536 AGACTACAAAACCATGCACG---ACTCATATGATTCACAGGGAACTGATCAATTACAGAA 111592 | |||| | ||||| | ||| || | ||||| || || | | Sbjct 48767 CAAGTACACGAATATGCATGCGGACTACAGTGGT---CAGGGCGTGGACCAGCTCGCTGA 48823 Query 111593 TGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 || ||| | ||| | | || ||||| || || || ||| | | ||| |||| Sbjct 48824 GGTGATTCA-CAAGCTGCGTACGAACCCGACGGACCGCCGGATTGTGCTCTCTGCGTGGA 48882 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG 111711 ||||| || | | | ||||| || |||||||| || | | ||||||||||| | Sbjct 48883 ACCCAGCTGATCTCAACGAGATGGCGCTGCCACCATGCCACATGTTCTGCCAGTTTTACG 48942 Query 111712 TACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTG 111771 | ||||||| | | || ||||| ||||| ||||| ||||| || || || || || | Sbjct 48943 TGGCCGACGGGGAGTTGTCTTGCCAGATGTACCAGCGCTCTGCCGACATGGGACTCGGCG 49002 Query 111772 TTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATC 111831 | || || || ||||| || ||||| || || || | || | || || | || | Sbjct 49003 TCCCTTTCAACATTGCCAGCTACGCGCTTCTAACGCGACTAGTAGCGCAGGTGACTGGAC 49062 Query 111832 TCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTG 111891 | || || || || || || ||||| || || ||||| || || || |||||| | | Sbjct 49063 TGAAGCCTGGCGAGTTTATCCACGTCATAGGCGATGCACACGTGTATCTGAACCACGTGG 49122 Query 111892 ATGCACTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 | | ||| | | ||| | | ||| ||| | ||||| || |||||||||| Sbjct 49123 AACCGCTTCAGAAGCAGCTAACGCGGGCACCGCGCTCGTTCCCGACACTTCATATCAA 49180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303263474320454