Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1009 118 1e-21 >seq1009 Length=13826 Score = 118 bits (130), Expect = 1e-21 Identities = 305/459 (66%), Gaps = 13/459 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | ||||||||||| ||| | |||||||| | ||| || | ||||| || | Sbjct 3619 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 3678 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | |||| || ||||| ||||| ||||| || ||||| || | || ||| || || | Sbjct 3679 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 3738 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 32827 | ||||| || || || || | ||||| || | || | ||| || || | Sbjct 3739 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 3798 Query 32828 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || | || | | |||||| | ||||| | ||| ||||| | || || || || || | Sbjct 3799 GCGGGTC--GCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTT 3855 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | |||||| | ||| | ||| || || | || || | || || ||||| | | Sbjct 3856 CGATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCA 3915 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | || | ||||| || ||||| || ||||| || || || ||||||||||| | || Sbjct 3916 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAG 3975 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCC 33064 |||||| | || ||||| | | || |||| || | ||| ||||| || || || Sbjct 3976 CCTCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCC 4033 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||||||||| || || || || | || || || || || Sbjct 4034 GTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAA 4072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633589253601200