Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq989 105 6e-18 seq312 91.5 1e-13 seq1233 86.0 5e-12 >seq989 Length=14097 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 1158 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 1217 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| || || || || || Sbjct 1218 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1277 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 1278 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 1337 Query 22399 ATTCAAAA 22406 || || || Sbjct 1338 ATCCAGAA 1345 >seq312 Length=34779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||| | || || || ||| |||| || || ||||| | Sbjct 24192 AAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCG 24251 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || |||||||| ||||||||||| || || || || Sbjct 24252 TCGGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGAC 24311 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | ||||| |||||| | ||| ||| Sbjct 24312 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 24371 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || || | || | || |||| ||||||| || Sbjct 24372 AATATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGG 24421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 24879 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || |||||||| ||||||||||| || || || || || Sbjct 24939 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24998 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | ||| |||||| Sbjct 24999 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 25058 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || |||| |||| || ||| Sbjct 25059 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGGT 25106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 24423 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24482 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || |||||||| ||||||||||| || || || || || Sbjct 24483 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24542 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | ||| ||||| Sbjct 24543 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24602 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 24603 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGG 24649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 24651 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24710 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || |||||||| ||||||||||| || || || || || Sbjct 24711 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24770 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | ||| ||||| Sbjct 24771 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24830 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 24831 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGG 24877 >seq1233 Length=11135 Score = 86.0 bits (94), Expect = 5e-12 Identities = 265/402 (66%), Gaps = 11/402 (3%) Strand=Plus/Minus Query 129997 CTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | |||| | ||||| | ||||| || | |||||| ||||| || ||||| Sbjct 7054 CTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAG 6995 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAAT 130114 |||| || ||||| |||| || ||| || | || || ||||| | Sbjct 6994 AACAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTC--TTGCGGAGGTCCAGGAACT 6937 Query 130115 CGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GC 130171 || | | ||||||||||||||| || | || || || | | |||||| || || || Sbjct 6936 CGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGC 6877 Query 130172 CCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGT 130231 | || ||||| |||| |||| | | | |||| | || |||| ||| | | || | Sbjct 6876 CGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCAT 6817 Query 130232 TGGCCGTGCCGTTTGTGCTCTC-AATGAAACTGCCACGAGCCCGAACGTTATGAACGCTT 130290 ||| || |||||| |||| ||| ||| | ||| || || | ||| || | ||| Sbjct 6816 TGGACGAGCCGTTCGTGC-CTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTG 6758 Query 130291 AGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAAT 130349 | || ||||||||| | | || || || ||||||| | || | ||||| || || || Sbjct 6757 ATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAGAT 6699 Query 130350 GCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 ||| |||| ||| || | ||| || ||||| ||||| Sbjct 6698 GCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGA 6657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419700391997305