Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq41 113 4e-20 >seq41 Length=78637 Score = 113 bits (124), Expect = 4e-20 Identities = 445/686 (65%), Gaps = 33/686 (5%) Strand=Plus/Minus Query 20153 CGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TAGATGTGGGCATCTCCCAA 20211 ||||| |||||| | | || || || | || ||| | || | ||| ||||| || | Sbjct 49147 CGCGTTAGCTGCTTCTGAAGCGGTTCCACGTG-GTTCAGATACACGTGTGCATCGCCTAT 49089 Query 20212 CGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAG 20271 ||| |||||||| || || | || ||||| || || || | | |||| || Sbjct 49088 GACGTGGATAAACTCGCCAGGCTTCAGTCCAGTCACCTGCGCTACTAGTCGCGTTAGAAG 49029 Query 20272 GGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAG 20331 | |||||||||||||| ||||| || || | |||||||| | || | ||| |||| Sbjct 49028 CGCGTAGCTGGCAATGTTGAAAGGGACGCCGAGTCCCATGTCGGCAGAGCGCTGGTACAT 48969 Query 20332 CTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAG 20391 ||| || || | ||| ||||| || || ||||| || || |||| ||| || || || || Sbjct 48968 CTGGCAAGACAACTCCCCGTCGGCCACGTAAAACTGGCAGAACATGTGGCATGGTGGCAG 48909 Query 20392 CGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCG 20450 ||||||| || || || || |||||||||||| | | | || | | || || Sbjct 48908 CGCCATCT-CGTTGAGATCAGCTGGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCG 48850 Query 20451 GATTATT----TTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTA 20506 | || | | | |||| | | | | ||||| | ||||| || | Sbjct 48849 GGTTCGTACGCAGCTTGTGAATC----ACCTCAGCGAGCTGGTCCACGCCCTGACCACTG 48794 Query 20507 TAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACA 20566 ||||| |||| | | | |||| || || ||||| | ||||||||| ||||| || Sbjct 48793 TAGTCCGCATGCATATTCGTGTACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACC 48734 Query 20567 GGTCCCAAATCCCC--CTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGG 20624 ||||| | || || || || | | | ||| || || | | |||| |||| | | Sbjct 48733 GGTCCGAGGTCGCCAACTTCC--CGATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCG 48676 Query 20625 AGCCATTTTTGTCCCATATCTTGACTCCTGTTCT--TGAAA-----GCTCCCTGGAGTCA 20677 | ||||| |||||| || ||| | | |||| || || | | || | || Sbjct 48675 ATCCATTGCCGTCCCAGAT-GTGAATGTTCTTCTGCTGCAACGTGTGAGCGCTTGTGT-- 48619 Query 20678 GTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTT 20737 |||| | | | ||||| |||||||| | | || |||||||| ||||||||||| Sbjct 48618 ---CTCCGC-TAATGAACCACAGCAGCTCCTCGGCCACACCTCGCCAGAACACCCGCTTG 48563 Query 20738 GTGGTTAGTAA-GGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGA 20794 || || || || |||| | || |||| ||||||| |||| |||| ||||| | Sbjct 48562 GTCGTCAGCAATGGGAGCACGTTCTCCCTCAGACTAAACCTCATCTGCGCTCCAAACACT 48503 Query 20795 GAGAGGGTGCCTATGCCGGTGCGGTC 20820 || || || || | || |||||||| Sbjct 48502 GACAGCGTCCCCGTTCCCGTGCGGTC 48477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441343023887480