Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq415 143 6e-29 seq1009 116 8e-21 seq588 104 5e-17 >seq415 Length=29729 Score = 143 bits (158), Expect = 6e-29 Identities = 673/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || ||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 16609 CTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 16668 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 16669 GTGAGACTCAATGTGGTGGAATGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 16728 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| | ||||| |||| ||| || | ||| Sbjct 16729 CTTCCACACCTGACCACTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATAGTCGA 16788 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT- 333552 || || ||||| || ||| | ||| | || | | ||| | | | ||| Sbjct 16789 CTTACCGGCACCGTTGGGGCCCAGCACGGCGATACGGCT------CGAAAGC-GCGCACG 16841 Query 333553 TCAC------GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 |||| ||||| | | || || ||||| |||| | || || | Sbjct 16842 TCACCGAGATGTTGTTGATCGACGGCTTGGGGGTTCCCGGGTACTGGTACGAG-CAGTTC 16900 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| ||||| | | ||||| || ||||| ||| Sbjct 16901 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCCGGG 16960 Query 333666 AACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 333720 ||| | ||| | ||| || |||| || ||||||| | | || || Sbjct 16961 AACGTGAACTTCACATTGTC--CGACTCG---AGCTCGTAGTACGCCTTGGCCTCAGGCT 17015 Query 333721 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 333780 || || |||||||||||| || || |||||||| |||||||||| || | |||| Sbjct 17016 TCTGCTCCACGAACTCGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 17072 Query 333781 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 | || || || |||||| || | ||||||||| || |||||||| ||||| || | Sbjct 17073 AGTGAATGATGTTGGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATCG 17132 Query 333841 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAA 333900 | | |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 17133 AGGTCACGTTCGGCAGGCTCGTCAGGTAATTCTCCAGCCAGGCGACGTTCTTGACATCCA 17192 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960 ||||| |||||||| ||||| || || | | || ||| | ||||| ||||| || | Sbjct 17193 AGTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCA 17252 Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 334020 | | |||||||| ||||| || || ||||||||| | || ||| || | Sbjct 17253 GCTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCA 17306 Query 334021 TATCA------AAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATG 334073 | ||| ||||| || | || || || | | || ||||||| || Sbjct 17307 TCTCAGGGGTGAAGCCCACGCTGCCGAGGGT-GTCCCTAACCTCGTCACGAG-----GTG 17360 Query 334074 TTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | || ||| | | |||||| |||||||| | | | || | || || || Sbjct 17361 TGTT-CTTCAGGTCCTCATCAACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 17419 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 334192 | | || | ||| || ||| | ||||||||| | | ||| | |||||| || || Sbjct 17420 GCCTGCAGGTTGTGCTCAACGAACACAGTTTTCAGCTCGT-CGCGGCTGGGGAAGCCCTC 17478 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 ||||| || || || ||||||||||| || || ||||| || || || || || Sbjct 17479 GAGCTGGCCATTGGAGATGGCGCGCATCAGGGTCGACTTACCACAACCATTGGGACCGCA 17538 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| |||||||| || | || | |||||||| ||||| | || Sbjct 17539 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACC 17598 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||| || || || || || || || | ||||| || Sbjct 17599 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 17634 >seq1009 Length=13826 Score = 116 bits (128), Expect = 8e-21 Identities = 550/860 (64%), Gaps = 18/860 (2%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 4201 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGG 4142 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | ||| ||| ||| || ||||||| | ||| |||| || Sbjct 4141 ACGGCCGAGGAGCTCGACCTGGT-GCACGACCTCAACGACTGG---GCGAAGCTCACGGA 4086 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | |||| || || |||||||| ||| | || | || ||||| | | || || || || Sbjct 4085 CAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGACGGCATCGT 4026 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | || |||||| | ||||| || ||||| || || ||||| || || Sbjct 4025 CAATGAGAATCTGGCCATGAACTTCAGCAACGAAGTGCAAGTGCCCGAGGCTCGCTGCTT 3966 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | || ||| | || ||| ||||| || || || | || || || || Sbjct 3965 CTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 3906 Query 243174 CGCGCTTATTTCAGATGA-ACAAGAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | || || ||| | || || | ||| || | || | || ||||||| || Sbjct 3905 CACG--TACATCA-AGGACACCGTGGAGAAGAACCACCTCCTGTGTGCTATCGAAACGAT 3849 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCATT 243290 ||| || || || || || || ||||| | |||||| || || || || | Sbjct 3848 CCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTGTCGTC 3789 Query 243291 TG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTT 243347 | |||||||| | || | | | || || || || | || || || || Sbjct 3788 CTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTT 3729 Query 243348 CTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| | |||| ||||| ||| || | |||||||| ||| | | || ||||| Sbjct 3728 TTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGA 3669 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 | | |||||||||||||||||| | ||| | |||| || ||||| || ||||| Sbjct 3668 GATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGTACTCCAAGCT 3609 Query 243468 CCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACG 243526 ||||||||| || || || ||| | | ||| | || || || | | | Sbjct 3608 GGTGAACAAGCTGCCGGA-GAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTG 3550 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 | | || ||| | |||||| | | || ||| || ||||||||||| |||| Sbjct 3549 AGCACGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCA 3490 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || | ||||||||||| ||||| || ||||| | | | |||| ||| || ||| Sbjct 3489 TGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCGCTGGGTG-TGTCCAAG 3431 Query 243647 -TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | |||||| ||||||||| || | || ||||| | || ||||| || || || || Sbjct 3430 ATCTACAACGTCAAGAACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACC 3371 Query 243706 AACTTCTTCGAAAAGCGTGT 243725 ||||||||||| | |||||| Sbjct 3370 AACTTCTTCGAGAGGCGTGT 3351 >seq588 Length=22666 Score = 104 bits (114), Expect = 5e-17 Identities = 550/863 (64%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 21014 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGG 21073 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | || || ||| ||| || |||||| | ||| |||| | Sbjct 21074 ACGGCCGAGGA-GCTCGACTTGGTGCACGACCTCAATGACTGG---GCGAACCTCACGAA 21129 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | |||| ||||| |||||||| ||| | || | ||| || || | | ||| ||||| || Sbjct 21130 CAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGT 21189 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || ||| | ||||| || ||||| ||| || ||||| || || Sbjct 21190 GAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTT 21249 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||| | || ||| ||||| || || || | || || || || Sbjct 21250 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 21309 Query 243174 CGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATT 243231 | || || ||| || | ||| || | || | |||||||| | ||| Sbjct 21310 CACG--TACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAGACCATC 21367 Query 243232 CCG-GCGGTTCAT-AACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCAT 243289 ||| ||| ||| || || || | ||||| | | |||| || || || || | Sbjct 21368 CCGTGCG--TCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCT 21425 Query 243290 TTG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | |||||||| | |||| | ||| || || || | || || || | Sbjct 21426 CCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCT 21485 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| | ||||| ||||| ||| || | ||||| || ||| | | || || | Sbjct 21486 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATG 21545 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 || ||||||| || ||||||||| | ||| | |||| | || ||||| || |||| Sbjct 21546 AGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGTACTCCAAGC 21605 Query 243467 TCCAGAACAAGCTACCATTCGAAA--CG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 | |||||||| || |||| || || | | || | || || || | | Sbjct 21606 TGATCAACAAGCTGCCG---GAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGGTGA 21662 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || | || ||| | ||||| | | || | | || || |||||||| | | Sbjct 21663 TTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGC 21722 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | || |||||||| ||||| ||||||||| | | | |||| || || Sbjct 21723 TCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCG-TGTCT 21781 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| | |||||| |||||||||| || | || ||||| | || ||||| || || || Sbjct 21782 AAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 21841 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 21842 ACCAACTTCTTCGAGAAGCGTGT 21864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102803736881950