Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1233 246 4e-60 seq588 158 1e-33 seq1009 156 5e-33 seq389 89.7 6e-13 >seq1233 Length=11135 Score = 246 bits (272), Expect = 4e-60 Identities = 906/1395 (65%), Gaps = 53/1395 (4%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || || | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 7885 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 7826 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 114060 || || |||||||| |||| ||||| ||| || | || | || |||| ||||| Sbjct 7825 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 7769 Query 114061 --CTTGAGGGCGTCCCAGT--CGTAGTTGAG-CTTTGTC----TCCCCCTGCCACATATC 114111 ||| || || |||||| | || | | | | | |||| |||| || Sbjct 7768 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCC----ACATGTC 7713 Query 114112 AAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC 114171 ||||||| |||||| | | ||| |||||||||| || |||||||| ||||| || Sbjct 7712 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAG 7656 Query 114172 CTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCG 114228 |||| || | || || ||| | || |||| || || ||||| || ||| Sbjct 7655 CTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT 7596 Query 114229 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCA-CAAAATAAATACA 114286 || | | |||| ||| || |||||| ||| || || ||| || | Sbjct 7595 CATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTT--CATCAGAATGAACGCG 7538 Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || ||||| || ||||||| || | ||||| || | ||| || ||||| || || Sbjct 7537 TCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCC 7478 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 | ||||||| || | || ||| || ||| | || || || ||| || |||||| Sbjct 7477 TCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTT 7418 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGG 114465 | || | ||||| | ||| | || || || || || | || |||| || Sbjct 7417 ACCACCTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGG 7362 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 ||||| | |||||||| || ||||| | |||||| |||||||| || | Sbjct 7361 CAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGAC 7302 Query 114526 TTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 || ||||| || ||| |||||||||| ||||| || || ||||| Sbjct 7301 CTCGCAGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCG 7245 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 ||| ||| |||||||| |||||| | ||| ||||||||| | |||| | || || Sbjct 7244 GTTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGAT 7185 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCCTCCTCGT 114698 || ||| || | || | ||| | ||| ||| || || |||||| ||||| Sbjct 7184 GGCGAACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGT 7129 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 |||| ||||||||| |||||||| || ||| | ||| | || || || || | | Sbjct 7128 ACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGT 7069 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 |||||||| || ||||| ||| ||| || | |||||||||||| || |||| Sbjct 7068 TGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGA 7009 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGC 114877 |||||| || |||| || || || || || || | | || || || || Sbjct 7008 CCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGG 6950 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | |||| || || | | || ||||||||||| |||||||| | |||| || ||| Sbjct 6949 AGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCC 6890 Query 114938 TTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATT 114994 || || | || |||||| || || | ||| ||| | || || ||||| ||||| Sbjct 6889 TTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATG 6830 Query 114995 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 115054 || ||||| |||| || ||| || || || || || || |||| | || Sbjct 6829 GGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATG 6770 Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 115114 | || ||| || || || || || |||||||| ||||| |||||||| | |||| Sbjct 6769 TTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGC 6710 Query 115115 CTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATT 115174 || ||||||| || ||||| ||||| ||| | || | |||||||| ||||| Sbjct 6709 GTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 6650 Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 115233 || || | || || || ||||||||||| || || |||||||| |||| | || | || Sbjct 6649 TGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGA-ACTTCTG 6591 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 | ||| ||||| ||||| | |||| | ||||| || ||| || || | || Sbjct 6590 GCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGC 6531 Query 115294 GACCCGCATAAACAT 115308 || ||||| | ||| Sbjct 6530 CACGCGCATGATCAT 6516 >seq588 Length=22666 Score = 158 bits (174), Expect = 1e-33 Identities = 359/534 (67%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 21880 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 21821 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 21820 GTCCATCCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAG 21761 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||| ||||| | |||| | | |||||||||||||| | Sbjct 21760 CAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAA 21701 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | ||||||| ||| | |||| | | |||||| |||| || || ||||| || Sbjct 21700 CTCCACCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAAT 21641 Query 125992 GGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA 126049 |||| | | | || ||| | | ||| || |||| |||| | |||| Sbjct 21640 CTCGTGCACGCGGCTTTCCGGCAGCT-TGTTGATCAG---CTTG--GAGTACATGAGGCA 21587 Query 126050 AAC----TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 | | || ||| | |||||||||||| |||||| ||||||||||||| || || Sbjct 21586 AGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACC 21527 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | || || || |||||||||||||| Sbjct 21526 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGAT 21467 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 |||||||| || || || | |||||||| | ||||| | | ||| | Sbjct 21466 CCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCA 21407 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| | | |||||| || || || ||| || ||||||| ||||| ||| || Sbjct 21406 CCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 21353 >seq1009 Length=13826 Score = 156 bits (172), Expect = 5e-33 Identities = 394/591 (67%), Gaps = 15/591 (3%) Strand=Plus/Plus Query 125748 CCAGCTT-GCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||||| | ||| || || || ||| ||||||||||||| ||||| || | | | Sbjct 3330 CCAGCTTTGGAGTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 3389 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || ||||||||||| ||| | || | | ||| || | | Sbjct 3390 ATCATGTCCATCCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAG 3449 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || ||||| || | ||| |||| ||||||| |||| | |||||||| ||| Sbjct 3450 TACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCG 3509 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 || || | ||||||| ||| ||| |||| | | |||||| | ||| || || ||| Sbjct 3510 ATCAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGC 3569 Query 125987 ACGATGGCGTGAA-TGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC 126045 ||||| |||| | | | || | ||| | || || |||| |||| | Sbjct 3570 ACGATCTCGTGGACTCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATG 3623 Query 126046 -GGCA----AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 126100 |||| || || ||| | |||||||| || ||| | || |||||||||| Sbjct 3624 AGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTG 3683 Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 || || |||||||| || |||||||| | |||||| | || ||||| || ||||||||| Sbjct 3684 AGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAG 3743 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGT 126219 ||||| |||||||| | || ||||| | |||||||| | |||| || || | Sbjct 3744 AAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGG 3802 Query 126220 GTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||||||| | ||||| | || || |||| || ||||||| || | ||| || Sbjct 3803 GTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGC 3862 Query 126280 TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | ||| | ||||| || | || ||||||||| | || ||||| Sbjct 3863 ACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 3913 >seq389 Length=32118 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 ||||||||||| | || || || ||||| | |||||| || || ||||| |||||| Sbjct 15837 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 15896 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || || ||||| ||||| || | ||| ||||| || || || | ||| || ||||| || Sbjct 15897 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 15956 Query 172883 TCCGTCACGATGAGCGTACACT 172904 || |||| || |||| |||| Sbjct 15957 TCGGTCAAAATAAGCGAGCACT 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313301032760