Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq989 125 8e-24 seq312 123 3e-23 >seq989 Length=14097 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 1347 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 1288 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||||||| |||||| || |||| | | | Sbjct 1287 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 1229 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 1228 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 1169 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 1168 AAGATCTGCAT 1158 >seq312 Length=34779 Score = 123 bits (136), Expect = 3e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || |||||| || |||||||| || ||| || || | Sbjct 24410 ACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCC 24351 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 24350 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 24291 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 24290 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 24232 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || |||||||| || ||||| || ||||| ||||| || Sbjct 24231 TCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24192 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || |||||| || |||||||| || ||| || || | Sbjct 24638 ACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCC 24579 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 24578 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 24519 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 24518 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 24460 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| || ||||| ||||| Sbjct 24459 TCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24423 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || |||||| || |||||||| || ||| || || | Sbjct 24866 ACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCC 24807 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 24806 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 24747 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 24746 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 24688 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| || ||||| ||||| Sbjct 24687 TCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24651 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| ||| || | | ||||| |||| |||| || |||||| || || || Sbjct 25115 AATTTAGTTACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTT 25056 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || ||| || || |||| || |||||||| |||||||| || || |||||||| Sbjct 25055 GTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTG 24996 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGC 42150 ||| | || | || |||||||||| ||||| || || | ||| | | | || ||| Sbjct 24995 GTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCG 24937 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || | |||||| || |||||||| || ||||| || ||||| ||||| Sbjct 24936 ACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543176153506480