Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1233 441 7e-119 >seq1233 Length=11135 Score = 441 bits (488), Expect = 7e-119 Identities = 1121/1698 (66%), Gaps = 54/1698 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||| || || |||||||| || || ||| || ||| |||| ||||| |||||| Sbjct 6609 GCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTG 6668 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||||||| || || | ||||| |||||| | || ||| | Sbjct 6669 CTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGC 6728 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| ||||| | ||| || | || |||| | Sbjct 6729 ATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCCACCAACAGC 6788 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| || || |||| ||||| || || |||||| Sbjct 6789 TACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCTGCGCGTGTTCAAC 6848 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||||||||||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 6849 GACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATCTAC 6908 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | ||||| || ||||||||||||||| Sbjct 6909 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAACCACGGCAAC 6968 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | |||| | ||||| |||||||| |||||||| || || || || ||||| Sbjct 6969 GAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTCTTCATGAAG 7028 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| || | ||||| || || || ||||| ||| ||||||||||| | Sbjct 7029 AGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCCGGACTGTAC 7088 Query 94372 GA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || | | | || || | ||||| | | | || | ||||| || ||||| ||| Sbjct 7089 GAGTGCTGGGGGGACGAG-TTTGAGGCCCTCTACGAGAAGTACGAGACGGAGGGCCGGGC 7147 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || | || | |||||||| ||| |||||| ||| | ||||| Sbjct 7148 CCGCAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCCCAGATCGAGAC 7207 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||||| ||| ||| ||||||| | | |||| |||||||||||||||| |||| Sbjct 7208 GGGGGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCT 7267 Query 94551 CGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || | || ||||| || ||||| |||| | | ||||| || || || || Sbjct 7268 ---GGGCACCATCCGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACACGTCGCCCGA 7324 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || ||||| ||||||| || | |||| ||| |||||| || | | Sbjct 7325 TGAGGTGGCGGTGTGCAACCTGGCGTCGGTGGCCCTGCCCAAGTTCGTGGAGGAGGAC-- 7382 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT--- 94724 | | |||| | || ||| || || | || || | |||| Sbjct 7383 ----------GGTGTGTTCAACTACCAGAAGC---TGTACGAGGTGGTAAAGGTGGTGAC 7429 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | ||||| |||| ||| || || |||| ||||||||| |||||||| || || Sbjct 7430 CCGCAACCTCAACAAGGTGATTGATGTCAACTACTACCCCGTGGCGGAGGCGCGCAAGTC 7489 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| || || || || | || ||||| || |||||| | || |||||| | | | Sbjct 7490 CAACATGCGCCACCGCCCGGTGGGGATCGGTGTGCAGGGTCTGGCCGACGCGTTCATTCT 7549 Query 94845 GATGCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTCG 94900 |||| || | | | ||| ||| ||| || | || ||||||| |||| Sbjct 7550 GATG-AACTACGCGTTCGA---GAGCGAGCAGGCTCGTGAGCTCAACATGAACATCTTCG 7605 Query 94901 AAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGC 94960 | | ||| || |||| ||||| | || | | | |||| ||| || | Sbjct 7606 AGACCATCTACTACGCTTCCATGGAGACGTCGATGGAGATCGCCA---AGGAGCTTGGCC 7662 Query 94961 CACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGG 95019 | |||| |||||| |||||| ||| | | |||| || || ||||||||| | ||| Sbjct 7663 CGTACGAGACGTTCCAGGGATCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGTGG 7721 Query 95020 GGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA 95076 || | | || | |||||||||| |||||| || || | | || || ||| Sbjct 7722 GGCATCACGCCTTCGTCGGGTCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTGATTAAA 7781 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| |||| || |||||||||||||| ||||| || || || |||||| Sbjct 7782 CACGGAATTCGGAACTCGCTTCTGGTGGCCCCCATGCCTACGGCTTCTACTGCTCAGATC 7841 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| |||| || | ||| || ||| ||||||| | || ||||| Sbjct 7842 CTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATGTACAATCGCCGTGTGCTT 7901 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 ||||| || ||| | || | |||||| |||| | |||| |||| ||||| | Sbjct 7902 GCCGGTGAGTTCACGATCGTGAACAAGTACCTGATGAGGGAGCTGATCGAGCTGGGCATC 7961 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| |||| ||||| | || || | || ||||| ||||| | | Sbjct 7962 TGGACGCCTGAGGTGCGCAACCAGATCCTGAACGACGGTGGTTCCGTGCAGAAGGT---G 8018 Query 95317 CAA---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || || || || || |||||| |||||||| |||||||||||| |||| Sbjct 8019 AAATCCATCCCTGACAACGTCAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG 8078 Query 95374 GTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNN 95433 | | | || |||| | || | ||| || ||| ||| |||||||| Sbjct 8079 GCGGTGCTGGACCTGTCTGCTGACCGTGGTGCCTACATTTGCCAGAGTCAGTCGCTCAAC 8138 Query 95434 NNNNNNATGGCCGA---GCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGG 95490 || ||||| | ||| | || || | || |||||| ||||||| ||| Sbjct 8139 ATCCACATTGCCGACCCGACCATTAGC---AAGCTTACTTCCATGCACTTCTACGCCTGG 8195 Query 95491 AGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATA 95550 | ||||| |||||||| || ||||| || |||| | || || || ||| |||| Sbjct 8196 AAGAAGGGGCTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATC 8255 Query 95551 CAGTTCGCCCTAGAAAAG 95568 |||||| || | || ||| Sbjct 8256 CAGTTCACCGTGGACAAG 8273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494689824736120