Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq519 104 2e-17 seq826 86.0 5e-12 >seq519 Length=31183 Score = 104 bits (114), Expect = 2e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| |||| ||||| | ||| | ||| | ||||||||||| ||| | | Sbjct 25598 ACGGCGGGCGCGCATCGCCTCTGGTCGCACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 25539 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 |||||||| ||| ||| |||| |||| || ||||||| ||||| || | Sbjct 25538 GTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCGCGC 25479 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | | Sbjct 25478 GACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGACCCGCACAACTCGGAGCGC 25419 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || ||| ||||||||| |||| ||| ||||| | |||| || ||||| | || Sbjct 25418 GGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTACGCAAGCACAGGAACGTGCGCGCG 25359 Query 108595 GCCGG 108599 ||||| Sbjct 25358 GCCGG 25354 >seq826 Length=16995 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 14019 CACCATCTTCCACTGGTGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 14078 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| | | | Sbjct 14079 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTCGTCAA 14138 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 14139 GAAGGACCCCAAGGTGGTCAAGGCCGG 14165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747688536168