Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq312 149 6e-31 seq588 104 2e-17 seq989 102 8e-17 seq1233 100 3e-16 seq1009 96.9 3e-15 >seq312 Length=34779 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | ||| ||||| || || |||||||| |||| | Sbjct 24649 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24590 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 24589 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24530 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||||||| | |||| |||| | ||||| ||| || Sbjct 24529 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 24471 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||||||| || || || ||||||||| Sbjct 24470 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24422 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | ||| ||||| || || |||||||| |||| | Sbjct 24877 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24818 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 24817 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24758 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||||||| | |||| |||| | ||||| ||| || Sbjct 24757 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 24699 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||||||| || || || ||||||||| Sbjct 24698 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24650 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | ||| ||||| || || |||||||| |||| | Sbjct 24421 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24362 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 24361 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24302 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||||||| | |||| |||| | ||||| ||| || Sbjct 24301 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 24243 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| |||||||| || || || |||||||| Sbjct 24242 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24195 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | ||| ||||| || || || ||||| |||| || |||||| Sbjct 25093 CGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 25034 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| |||||||| || || || |||||||||||| Sbjct 25033 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 24974 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | || | Sbjct 24973 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 24915 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||||||| || || || ||||||||| Sbjct 24914 CGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24878 >seq588 Length=22666 Score = 104 bits (114), Expect = 2e-17 Identities = 299/448 (67%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 47136 GAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGC 47194 || ||| || | || || ||| ||| ||||| |||||||||||||| ||| ||| | Sbjct 21434 GAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGCT-C 21492 Query 47195 GATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAAT 47254 || || | | || | || | |||||||| |||| || || ||||| || Sbjct 21493 TATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCAT 21552 Query 47255 CTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGA 47314 | | ||||| ||| |||||||| |||| || || ||| ||| || || || Sbjct 21553 CAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGTACTCCA----AGCTGA 21608 Query 47315 TCAA-AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGC-CGAAGCCGTCGCCATTGAG 47372 |||| ||| || | | ||| ||| || | ||| ||| || || | |||||| Sbjct 21609 TCAACAAGCTGCCGGAAAGCCGCGTGCACGAGAT-TGTGCGCGACGCTGTGGTGATTGAG 21667 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 ||||| | ||| | || || | || | || |||||| ||| | | ||| Sbjct 21668 CACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATG 21727 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA-GCTAAA-GTATCCCAAGA 47490 | | |||||||| || || |||||||||||||| || | ||| || || |||| Sbjct 21728 TGCCAATACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGTCT-AAGA 21785 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 | ||| || || |||| || ||||| | ||| ||| || ||||| |||||||||||| Sbjct 21786 TCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCA 21845 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| ||||||||||| || ||||| || Sbjct 21846 ACTTCTTCGAGAAGCGTGTGGGCGAGTA 21873 >seq989 Length=14097 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 1345 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1286 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 1285 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 1226 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 1225 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 1166 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 1165 ATCTGCATG 1157 >seq1233 Length=11135 Score = 100 bits (110), Expect = 3e-16 Identities = 277/423 (65%), Gaps = 15/423 (4%) Strand=Plus/Minus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCGCC---CTGATCGACG 147126 ||||| ||||||| ||| ||||| | ||| || ||||| ||||| ||| || ||| Sbjct 6922 TGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 6863 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGAT------TTT 147180 | |||| || ||| ||||| || || | ||||| | || || ||| || Sbjct 6862 TAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGACGAGCCGTTC 6803 Query 147181 GTGGTGCCGTTGTA----TTGA--GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCG 147234 ||| | | |||| ||| |||| || | | |||| ||| | |||| || ||| Sbjct 6802 GTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTGATGCCGATGCCGCCG 6743 Query 147235 CCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294 || || || || | ||| ||| | | || | ||||||||| |||||| ||| Sbjct 6742 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCG 6683 Query 147295 TCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAAC 147354 |||| ||| ||||||| ||||| ||| || ||||| |||||| || || Sbjct 6682 TCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTGAAG 6623 Query 147355 AGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCG 147414 ||||||||| | ||||||||||| | | ||||| | | ||||| || | ||| Sbjct 6622 AGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAGCTCGTACGTCTCGAGCGCG 6563 Query 147415 CTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGT 147474 | | ||| | ||| ||| |||| || |||||||||| ||| ||||| || || Sbjct 6562 GCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGCGGCCGC 6503 Query 147475 TCC 147477 ||| Sbjct 6502 TCC 6500 >seq1009 Length=13826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| || | | ||| | |||||||||| || || || ||||| ||||| || Sbjct 3508 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTA 3450 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || ||| ||||| ||| || | |||| |||||||| | ||| ||| | Sbjct 3449 CTCGCTGGGTGTGTCC-AAGATCTACAACGTCAAGAACCCATTCGACTGGATGGACATGA 3391 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||| |||||||||||||||| ||||||| ||| || ||||| || Sbjct 3390 TCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGGGCGAGTA 3342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468721527280