Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1233 244 1e-59 seq588 156 5e-33 seq1009 154 2e-32 seq389 95.1 1e-14 >seq1233 Length=11135 Score = 244 bits (270), Expect = 1e-59 Identities = 851/1306 (65%), Gaps = 43/1306 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 7885 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 7826 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGTTC 116021 || || |||||||| |||| ||||| ||| || | || |||| ||||| Sbjct 7825 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 7769 Query 116022 --CTTGAGGGCGTCCCAGT--CGTAGTTGAG-CTTTGTCTCCCCCTCCCACATATCAAAC 116076 ||| || || |||||| | || | | | | ||||||| || ||| Sbjct 7768 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCCACATGTCGAAC 7709 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||| |||||| | | || |||||||||| || ||||| || ||||| || |||| Sbjct 7708 TGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAGCTCC 7652 Query 116137 ---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 || | || || ||| | || |||| || || ||||| || ||| Sbjct 7651 TTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATG 7592 Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGC 116252 || | | |||| ||| || |||||| | || || ||| || | || || Sbjct 7591 TTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGT-AGTTCATCAGAATGAACGCGTCGGC 7533 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 ||||| || ||||||| || | ||||| || | ||| || ||||| || || | | Sbjct 7532 CAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGC 7473 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 |||||| || | || ||| || ||| | || || || ||| || |||||| | Sbjct 7472 CACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCAC 7413 Query 116373 TTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 || | ||||| | ||| | || || || || || | || |||| || |||| Sbjct 7412 CTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGGCAGGG 7357 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | | |||||||| || ||||| | |||||| |||||||| || | || Sbjct 7356 CCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCGC 7297 Query 116492 TACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 ||||| || ||| |||||||||| ||||| || || ||||| ||| Sbjct 7296 AGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGG 7240 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 ||| |||||||| ||||| | ||| ||||||||| | |||| | || || || Sbjct 7239 CCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGA 7180 Query 116609 TCCATACATCGGCGGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTT 116664 ||| || | || | ||| | ||| ||| || || |||||| ||||||||| Sbjct 7179 ACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTC 7124 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||||||||||||||||| || ||| |||| ||| | || || || || | | || Sbjct 7123 TCGTAGAGGGCCTCAAACTCGTCCCCC-CAGCACTCGTACAGTCCGGGAGCTTCGTTGGG 7065 Query 116724 ACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 116783 ||||| || ||||| ||| ||| |||| |||||||||||| || |||| ||| Sbjct 7064 GCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCA 7005 Query 116784 GAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 |||||| |||| || || || || || || | | || || || || | | Sbjct 7004 GAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGGAGGT 6946 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 ||| || || | | || ||||||||||| |||||||| | |||| || ||||||| Sbjct 6945 CCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGC 6886 Query 116903 GA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | | || |||||| || || | |||||| |||| || ||||| ||||| || | Sbjct 6885 GCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGA 6826 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGT 117019 |||| |||| || ||| || || || || || ||| |||| | || | || Sbjct 6825 TGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGT 6766 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 | ||| || || || || || |||||||| ||||| ||||||| | |||| || Sbjct 6765 GCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGT 6706 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||| ||||| ||| | || | |||||||| ||||| || | Sbjct 6705 CGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCG 6646 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 | | || || || ||||||||||| || || |||||||| |||| Sbjct 6645 GACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAA 6600 >seq588 Length=22666 Score = 156 bits (172), Expect = 5e-33 Identities = 362/536 (68%), Gaps = 16/536 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 21880 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 21821 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 21820 GTCCATCCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAG 21761 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||| ||||| | |||| | | |||||||||||||| | Sbjct 21760 CAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAA 21701 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | ||||||| ||| | |||| | | |||||| ||||||| || || || || Sbjct 21700 CTCCACCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAAT 21641 Query 127465 GGCGTGAATAGTGTCCACCC--CAG---GTCTATT-GCGTAAAGT-CTTGAAGAGTTCCA 127517 |||| | | | | || ||| || || || | ||| | ||| | || Sbjct 21640 CTCGTGCAC-GCGGCTTTCCGGCAGCTTGTTGATCAGCTTGGAGTACATGAGG-----CA 21587 Query 127518 CAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 ||| || || ||| | |||||||||||| |||||| ||||||||||||| |||| Sbjct 21586 -AGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGAC 21528 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | |||||| || | || || ||||| |||||||||| Sbjct 21527 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGA 21468 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 |||||||||| || || || | |||||||| | ||||| | || | || Sbjct 21467 TCCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG-GACACACGCGGGTCG 21409 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| | | |||||| || || || ||| || || |||| ||||| ||| || Sbjct 21408 CACCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 21353 >seq1009 Length=13826 Score = 154 bits (170), Expect = 2e-32 Identities = 394/592 (67%), Gaps = 17/592 (3%) Strand=Plus/Plus Query 127221 CCAGCTT-GCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | ||| || || || ||| ||||||||||||| ||||| || | ||| | Sbjct 3330 CCAGCTTTGGAGTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 3389 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || ||||||||||| ||| | || | | ||| || | | Sbjct 3390 ATCATGTCCATCCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAG 3449 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || ||||| || | ||| |||| ||||||| |||| | |||||||| ||| Sbjct 3450 TACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCG 3509 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | ||||||| ||| ||| |||| | | |||||| | |||||| || || Sbjct 3510 ATCAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGC 3569 Query 127460 ACGATGGCGTGAA-TAGTGTCCACCCCAGGTCTATT-----GCGTAAAGT-CTTGAAGAG 127512 ||||| |||| | | | || | ||| | | || || | ||| | ||| | Sbjct 3570 ACGATCTCGTGGACTCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGGCA 3628 Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 | || || || ||| | |||||||| || ||| | || |||||||||| Sbjct 3629 T------GCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCT 3682 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 || || |||||||| || |||||||| | |||||| | || ||||| ||||| ||||| Sbjct 3683 GAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAA 3742 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTG 127691 |||||| |||||||| | || ||||| | |||||||| | |||| || || | Sbjct 3743 GAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCG 3801 Query 127692 TATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751 || ||||||| | ||||| | || || |||| || || |||| || | ||| | Sbjct 3802 GGTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAG 3861 Query 127752 CTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||| | ||||| || | || ||||||||| | || ||||| Sbjct 3862 CACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 3913 >seq389 Length=32118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 ||||||||||| | ||||| || ||||| | ||||||||| || ||||| |||||| Sbjct 15837 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 15896 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || || ||||| ||||| || | || ||||| || || || | ||| || ||||| || Sbjct 15897 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 15956 Query 176903 TCCGTCACGATGAGCGTACACT 176924 || |||| || |||| |||| Sbjct 15957 TCGGTCAAAATAAGCGAGCACT 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613465811270520