Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq588 197 2e-45 seq1233 165 1e-35 >seq588 Length=22666 Score = 197 bits (218), Expect = 2e-45 Identities = 565/860 (66%), Gaps = 34/860 (4%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| ||||||||| |||||||||||||||| || || || ||||| | |||| Sbjct 21865 CACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAA 21806 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||| ||| ||| | | || || | ||||| | ||| ||||| Sbjct 21805 CGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGGTCGGCCAC 21746 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| ||||| || | |||| || || | || | || ||||||| Sbjct 21745 GAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACCGGGAGCGA 21686 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || || ||||| | ||||||| | || || ||| |||||||| || | |||| Sbjct 21685 GTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCT-CGTG-CACG--- 21631 Query 159883 GTACCCCGGCTTGCC--CAAAATGTGG-TC--CTTAAA---CAGGAGGCACGCAAAGTCG 159934 |||||| || || ||| | || ||| | || |||||| || |||||| Sbjct 21630 ------CGGCTTTCCGGCAGCTTGTTGATCAGCTTGGAGTACATGAGGCAAGCGAAGTCG 21577 Query 159935 CAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATC 159994 ||||| |||||||| || ||||| ||| || || | | |||| || ||||||| Sbjct 21576 GTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATGAGG 21517 Query 159995 CCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCAC 160053 || ||| |||||||| || || | ||| ||| | | | | || |||||||||||||| Sbjct 21516 CCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAAGGAGCCCGAGAAGAAGATCCCCTCCAC 21458 Query 160054 GGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG-----CGTTGGTGTCATGGGTCCAC 160108 ||| ||||| |||| || | ||| | |||| || ||| || |||| Sbjct 21457 GGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCA-----CCAC 21403 Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168 || ||||| | ||| ||||| | || |||||| ||| ||||| ||| | || Sbjct 21402 CTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGG 21343 Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCG 160228 ||||| ||| | |||||||| || |||| ||| |||||| | || | | Sbjct 21342 TGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAG 21283 Query 160229 TGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACC 160288 || | || |||||||| ||||| ||| |||||| | |||||| | |||||| Sbjct 21282 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACT 21223 Query 160289 TCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAA 160348 || | |||| | |||| || | || || | |||||| ||| ||||||||| Sbjct 21222 TCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAAA 21163 Query 160349 GCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTC 160408 |||| |||||| |||||| || | ||||| || |||| || |||||| | Sbjct 21162 GCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAG---GTTCGCCCAGTCATTG 21106 Query 160409 ACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTAC 160468 | ||| || |||| || | ||| || || |||| || |||| || | |||||| Sbjct 21105 AGGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTAC 21046 Query 160469 ATGGCCCAGATGGCGTGCTC 160488 || ||| | | ||||||| Sbjct 21045 ATCTGCCACACGTCGTGCTC 21026 >seq1233 Length=11135 Score = 165 bits (182), Expect = 1e-35 Identities = 514/780 (66%), Gaps = 27/780 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 8273 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 8217 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||||| || ||||| | | | Sbjct 8216 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTTGCTAATGGT 8157 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || ||||| || ||| ||| |||| || || || | Sbjct 8156 CGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCACCACGGTCAG 8098 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | | ||||||| |||||||||||||||||| || ||| || Sbjct 8097 CAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGA 8038 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | ||| | || ||| | ||| | || || |||| || | ||| | Sbjct 8037 CGTTGTCAGGGATGGATT-TCACCTTCTGCACGGAACCACCGTCGTTCAGGA-TCTGGTT 7980 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||| | ||||||||||| || ||||| ||| | Sbjct 7979 GCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCAC 7920 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || |||| ||||| | || || ||| ||| ||| | || |||| Sbjct 7919 GATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTACGGCTCGAT 7860 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||| |||||||| | |||||||| || ||||| |||||||| |||| || || Sbjct 7859 GGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAG 7800 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 ||||| || | |||| ||| || | |||||| | | ||||| | || | Sbjct 7799 CGAGTTCCGAATTCCGTGTTTAATCACGTTCTCCTTCAGCGCAGCCCAGT--TCCACAGA 7742 Query 204373 ACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | | || | | |||||||||||||||||| ||||| || | ||| | || Sbjct 7741 CCCGACGAAGGCGTGATGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAT 7682 Query 204428 CCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCG 204487 |||| | ||||| || || | ||| | || | || ||| | |||||| Sbjct 7681 CCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTCCATCGACGTCTCCATGGAA 7622 Query 204488 TGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAA 204546 ||||| |||||||| ||||| | | | || | || || |||| | | || || Sbjct 7621 GCGTAGTAGATGGTCTCGAAGATGTTCATG-TTGAGCTCACGAGCCTGCTCGCTCTCGAA 7563 Query 204547 CGC-CAGACC--CAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 ||| || | ||| ||| ||| |||| |||| |||||||| ||||| |||| ||| Sbjct 7562 CGCGTAGTTCATCAGAATG---AACGCGTCGGCCAGACCCTGCACACCGATCCCCACCGG 7506 Score = 127 bits (140), Expect = 3e-24 Identities = 464/714 (65%), Gaps = 12/714 (2%) Strand=Plus/Minus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | ||||||||| ||||||||||| | ||||||||||| |||||| |||| Sbjct 7270 CCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACC 7211 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC 205042 || |||| ||||| | ||| ||| | ||||| | | || | | ||| Sbjct 7210 CCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTAATGGTCTTG 7151 Query 205043 ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CAC 205101 | | || | | |||||| || ||| || ||| |||| || || | ||| Sbjct 7150 CGGGCCCGGCCCTCCGTCTCGTACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCAC 7091 Query 205102 GTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCAC 205161 || ||| || ||| || ||||| || | ||| ||| | || | | || Sbjct 7090 -TCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGAC 7032 Query 205162 CCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCC 205221 ||||| ||| || || ||| || ||| || |||| ||||| || || |||| | | Sbjct 7031 CCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAGAACAGGTCGCGCGCCCGG-TGCA 6973 Query 205222 G-TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGC 205279 | |||| || ||||||| | |||||| || || | | |||||||||||||||| Sbjct 6972 GCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGG-AACTCGAACACGTCGGCGTGCCACGGC 6914 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339 || | | | ||| | | ||| | |||| || ||||||||||| ||| | | Sbjct 6913 TCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCC 6854 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTG 205399 | ||||||| || |||||||| || | | || |||| | |||||||||| | Sbjct 6853 GTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGG 6794 Query 205400 ATG--GCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 ||| || | | || | | |||| ||| ||| || ||||| | |||| Sbjct 6793 ATGTAGCTGTTGGTG--GCGCGGATGTTGTGCATGCTGATGCCGATGCCGCCGGCCCACT 6736 Query 205458 TGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 ||| ||| ||||||| |||| || ||| ||||||||| ||||||| |||||| | Sbjct 6735 TGGAGATGCACGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATGGAGTCGTCCTGC 6677 Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576 | | || ||| ||||||| | ||||| | | ||||| |||| |||||||||| Sbjct 6676 ATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTG 6617 Query 205577 GGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACG 205630 ||| | ||||| ||||| ||||| ||||| | ||| ||||| ||| || Sbjct 6616 GGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAGCTCGTACGTCTCGAGCGCG 6563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795101556842320