Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq588 269 3e-67 seq1009 250 2e-61 seq312 141 9e-29 seq989 122 9e-23 seq1785 98.7 1e-15 >seq588 Length=22666 Score = 269 bits (298), Expect = 3e-67 Identities = 605/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Minus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| ||||| || || || || || |||| || || || | ||| Sbjct 21873 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 21814 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || || ||||| | ||||||| ||| | || ||| | ||||| | | Sbjct 21813 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGG 21754 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 ||||||||||||||||||||||| ||||| | | || | || | || |||| Sbjct 21753 TCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACC 21694 Query 132790 GGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 || |||| ||| | ||| ||| |||| || | || |||||| || || || Sbjct 21693 GGGAGCGAGTCGCGCACGAACTCGT-GCTCAATCACCACAGCGTCGCGCACAATCTCGTG 21635 Query 132849 AACGCGCGCCGCGCTC-GGCCG-TTGC--ACCAAATGCTTGAA---CATCAAGCAAGCAA 132901 ||||| || || ||| | ||| | || ||||| | ||| | |||||| | Sbjct 21634 CACGCG----GCTTTCCGGCAGCTTGTTGATCA---GCTTGGAGTACATGAGGCAAGCGA 21582 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 ||||| |||| ||||||||| | | ||||| || || ||| | | ||||||| Sbjct 21581 AGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCA 21522 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||||||||| || |||||||| || || | | ||| |||||| ||||||| |||| Sbjct 21521 TGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCT 21462 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAG 133080 | ||||| || || |||| ||| ||||| | | | || | || || || ||| Sbjct 21461 CCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACAC-GCGGGTCGCACCAC 21403 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | |||||||| | || |||||| |||||||||| || || |||||||| || || Sbjct 21402 CTGAGCGCCCAGTGAGC--TTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCA 21345 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 || ||||| | | | ||| ||||| ||||| ||| || | |||| Sbjct 21344 GGTGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCG 21285 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||| | |||||| |||||||| || |||||||| ||||| || ||||| |||||||| Sbjct 21284 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCA 21225 Query 133259 CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 |||| | ||| | | |||| || ||||| ||||| ||||||||||| || || | Sbjct 21224 CTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGA 21165 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG 133378 | |||||||||||||||||||| || |||||||||| | | | | ||||||| Sbjct 21164 AAGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAGGTTCGCCCAGTCATTGA 21105 Query 133379 TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACA 133438 ||| | || ||| | ||||||| | ||||| || || ||||| || || ||||||| Sbjct 21104 GGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACA 21045 Query 133439 TACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494 | ||||| ||| | || ||||| || | ||| || ||| |||||| ||| Sbjct 21044 TCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGTTGGGGTTCTCG 20989 >seq1009 Length=13826 Score = 250 bits (276), Expect = 2e-61 Identities = 529/775 (68%), Gaps = 26/775 (3%) Strand=Plus/Plus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | ||| ||||||||||||||||| || ||||| | ||| | || | || | Sbjct 3453 AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCG-AGTTCATGCCGAT 3511 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||||| |||| ||| || ||| ||| |||| || || |||||| | Sbjct 3512 CAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGT-GCTCAATCTTCACAGCGTCGCGCA 3570 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATC 132891 |||| || || || || ||| ||| | ||| ||||| ||||| | ||| Sbjct 3571 CGATCTCGTGGACTCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATG 3623 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 | ||| || || || |||| ||||||||| | || | ||||| ||| | Sbjct 3624 AGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTG 3683 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | || |||||||||||||| || |||||||| || | | | || |||||| ||| Sbjct 3684 AGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAG 3743 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| |||||| || | || || |||| ||| ||||| | | | | | || | Sbjct 3744 AAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC-GCGG 3802 Query 133072 G-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | || ||| || ||||| | ||| || | | ||||||||| ||||||||||| || Sbjct 3803 GTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGC 3862 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGA 133187 || | || | |||| ||| || | | ||| ||||| ||||| ||| Sbjct 3863 ACACAGGA---GGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGCGA 3919 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 || | |||||||| | |||||| |||||||| || || ||||| ||||| || ||||| Sbjct 3920 GTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCCTC 3979 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | ||| |||||||| | ||| | | ||||||| || |||||||||||||| || Sbjct 3980 GGGCACTTGCACTTCGTTGCTGAAGTTCATGGCCAGATTCTCATTGACGATGCCGTCACT 4039 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC 133367 ||| ||||| ||||| ||||||||||||||||| |||||||||||||| | | | | Sbjct 4040 GGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGCTTCGC 4099 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||| ||| | |||||| | ||||||| | ||||| || || |||||||| Sbjct 4100 CCAGTCGTTGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGC 4159 Query 133428 TTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 4160 CTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCGG 4214 >seq312 Length=34779 Score = 141 bits (156), Expect = 9e-29 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||||| | ||||| ||| | | Sbjct 24879 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24938 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| ||||| || |||||| |||| Sbjct 24939 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 24996 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 24997 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACA 25056 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||||||||| |||| |||||| || | ||||| Sbjct 25057 ACATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGG 25105 >seq989 Length=14097 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 1158 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 1217 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 1218 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 1276 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 1277 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 1336 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 1337 CATCCAGAAGG 1347 >seq1785 Length=6806 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1781 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 1840 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||||||||||| ||||| |||| ||||| ||||||||||| Sbjct 1841 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGT 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139057092480