Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4346 399 3e-106 seq710 390 1e-103 seq389 98.7 1e-15 seq440 84.2 3e-11 >seq4346 Length=1503 Score = 399 bits (442), Expect = 3e-106 Identities = 851/1265 (67%), Gaps = 17/1265 (1%) Strand=Plus/Plus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | || | |||||| || | | || | || ||||| | |||||| || Sbjct 235 TTCTTGGTCGGCACCGTCGTGTTACGGGCGATCAGCGTCGTCATGACACCACCGGCCGTC 294 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC---- 7002 || || || || |||| || | ||||||| || | |||||| || ||| ||| Sbjct 295 TCCAGCCCCAGTGACAACGGCGCGACGTCCAGCAGCAGCAGGTCCTG--CAGCTTCTCCG 352 Query 7003 --GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCA 7060 | | | || | | | | |||||| || ||||| || |||||||| ||||| |||||| Sbjct 353 ACGATTCGTTGCCGC-TCAGGATGGCCGCCTGGACGGTAGCCCCGTAGGCGACAGCCTCA 411 Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120 |||||||| |||| || || | || || ||||| || | ||||| | || || || Sbjct 412 TCGGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCCGACAGCAGCTGCTGC 471 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180 | || ||||| || ||||| || || || | |||| || | ||| | || Sbjct 472 ACCTTGGGGATACGCGTCGAGCCGCCCACGAGCACGACCTCCTGCACCTGGCTCTTGGAC 531 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240 | ||| | ||| || || ||||| || || ||||| || ||||| |||| Sbjct 532 AGCTTGGCGTCGCGCAGCACCTTTTCCACGGGCTCCATCGTCTTGCGGAAGTAGTCGCCG 591 Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||||| ||||| || || || || || |||| | | ||| || ||||||||| | | | Sbjct 592 CACAGGTCCTCGAAGCGCGCGCGCGTGATGGTCGAGTTGAAGTCCACGCCGTCGAACAGC 651 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || || ||| | || |||| ||| || | ||| ||||| || ||||| || Sbjct 652 GAGTCGATCTCGATGTACGCCTGCGCCGACGACGACAGCGTACGCTTGGCTCGCTCGCAT 711 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 ||||| || | |||||| || || ||| |||| | | || || || || || Sbjct 712 GCCGTACGCAGACGACGCAGCGCGCGCTGGTTCTGCGCCAGGTCCTTGCGGTGCTTGCGC 771 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || ||||| | ||||| |||| | || | ||||| ||||| || |||| || Sbjct 772 TTGAACTCCTGCACGAAGTACTCGACG-AGGCGGTTGTCGAAGTCTTCGCCGCCCAGATG 830 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || ||||| || || || || || ||||| || | || ||| | | || ||| || Sbjct 831 CGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCCTCCTCGATGCTCAGCAGCGACAC 890 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 ||| || || || || |||||||| || ||||| ||||| ||| || | || ||| Sbjct 891 ATCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGGACGTTGCGCTCGCCGCCCTT---CTT 947 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 || || ||||||||||| || || ||||| || || || || ||||| || ||| || Sbjct 948 GTCCAGGCCGTACGCGATGGCGGCGGCCGTCGGCTCGTTGATGATACGCAGCACGTTGAG 1007 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||| || || | | || || || || || || || ||||| ||||| ||||||||||| Sbjct 1008 GCCGGCGATGGCGCCGGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGG 1067 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||||| | ||| |||| | |||| | ||| |||| | | || || | || ||| Sbjct 1068 CACCGTGATGACGGCGTTCTTGACCTCCTTGCCGATGAAGGCCTCGGCCACCTCGCGCAT 1127 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAA 7839 ||| | || ||||| || || ||||| || | | ||| || | || || || || Sbjct 1128 CTTGATCAGCACCATGGACGAGATCTCCTCGGGCTGGAACGTCTTGGACTCGCCCTTGAA 1187 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTT 7899 | || ||| || || || | || || | | | ||| ||| ||| | || Sbjct 1188 CTGCACCGTGATCTGCGGCTTGTCGCCGGCGCCCGACGTCAGCTTGAACGGCCAGTGCTT 1247 Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 || ||| ||||| ||||||| ||||| | ||||| || ||||| || || || Sbjct 1248 GATGTCGGACTGGACGATGGGGTCCGAGAACTTGCGGCCGATGAGGCGCTTGGCGTCGAA 1307 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || ||||| | || ||||||||| |||||||| || ||||| ||||| || || || Sbjct 1308 CACCGTGTTGTGGGCGTTCATGGCCACCTGGTTCTTGGCGGCGTCGCCGATGAGGCGCTC 1367 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | ||||| || || ||||||||||| || || || || || |||||||| || || Sbjct 1368 ---CGTGTCCGTGAAGGCCACGTACGATGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGAT 1424 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 || || ||||||||||| ||||| ||||| |||||||| || || || || | || || Sbjct 1425 GATCTCCACGCGGTCGTTCTGCCACACGCCCACGCACGAGTAGGTCGTGCCCAGGTCGAT 1484 Query 8140 ACCGA 8144 |||| Sbjct 1485 GCCGA 1489 >seq710 Length=19747 Score = 390 bits (432), Expect = 1e-103 Identities = 1175/1802 (65%), Gaps = 63/1802 (3%) Strand=Plus/Plus Query 6380 AGTTCCTTCTGTTTAGCCTCAAACTCTTCTGTTTCGGCAGATTGGTTCGCGTCTAACCAT 6439 || |||| ||| || || |||||||| || | || || | ||||| ||||| | ||| Sbjct 4928 AGCTCCTGCTGCTTGGCGTCAAACTCCTCCTTCTCAGCCGCCTGGTTGGCGTCCAGCCAC 4987 Query 6440 TCAAGTACCTCCGAAACCTTCGTTTCGACCGTTTCCTTATCCTCACCTTCAATCTTTTCG 6499 | || ||||| ||||| | |||||||| | ||| |||||| | | ||| | Sbjct 4988 TGCAGCGTCTCCGCCACCTTGTTCTCGACCGTCTTCTTGTCCTCAGCGCTGAGCTTGGCC 5047 Query 6500 ACCG--TTC----CTTTCATTT-----------GATAACA-GTAGTTTTCGAGACCATTC 6541 || ||| ||||||| || ||| |||||| || || | ||| Sbjct 5048 GCCAACTTCTCCTCTTTCATCGAGCTCCGCAGAGAAAACGCGTAGTTCTCCAGCGCGTTC 5107 Query 6542 TTCGCCTCGAC------CTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCA 6595 |||||||||| ||| || ||| || |||| || || ||||| || || Sbjct 5108 TTCGCCTCGATGCGCAGCTTGTT-GCGC-----TCGTCTTGGTCCTTGTACTTCTCGGCG 5161 Query 6596 TCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTA 6655 || ||||| || || || | ||| | || ||| || || ||||| ||||| Sbjct 5162 TCGGCTACCATGCGGTCGATCTCGGACTGCGACAGTCGCCCTTTGTCGTTCGTGATCGTG 5221 Query 6656 ATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCA 6715 ||||| | || |||| | ||| || | || || |||| || || || || Sbjct 5222 ATCTTGTTCTCCTTGCCCGTCGACTTCTCCACGGCCGACACGTTCAGGATGCCGTTGACA 5281 Query 6716 TCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTT 6775 || || |||||| | || | |||||| || | ||| | ||| || || || || Sbjct 5282 TCGACGTCGAACGTCACGTCAATTTGAGGCGCACCGCGCGGCATGGGCGGGATCCCATCC 5341 Query 6776 AAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACT 6835 | || || | || || | | |||||| || | | | ||||| || || | || Sbjct 5342 AGATTGAACTTGCCCAGAAGATGGTTATCGCGCGTCATGGTCCGTTCGCCCTCGAACACC 5401 Query 6836 TTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAA-GATTTGTTCTTTCTTAGA 6894 | || ||| | || ||||| || ||| ||||| || | |||| ||| | Sbjct 5402 TGGATCAACACGCCGGGCTGATTGTCCGCGTACGTCGAGAACGACTGCGTCTT-CTTGGC 5460 Query 6895 TGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCC 6954 || | |||||| || | || || | | |||||| | ||||| || || || || Sbjct 5461 AGGCACCGTCGTGTTGCGTGGGATGAGCTTGGTCATGACCCCACCGGCCGTCTCCAGCCC 5520 Query 6955 AAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG--------AACA-GATTCGTT 7005 || |||| || | ||||||| |||| |||||| || || | |||||||| Sbjct 5521 CAGTGACAACGGCGCGACGTCCAGCAGTAGCAGGTCCTGCAACTTGGAAGACGATTCGTT 5580 Query 7006 CCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGG 7065 || || | | ||| || |||||||| || || ||||| || || ||||| || || Sbjct 5581 GCC---AC---TGAGGATCGCAGCTTGGACGGTAGCGCCGTACGCCACGGCCTCGTCCGG 5634 Query 7066 GTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTT 7125 ||| |||| || ||| || || ||||| || | ||| |||| || || | || Sbjct 5635 GTTGATCGACTTGAACAGCTCCTTGCCGTTGAAGAAGTCCACCAACAACTGCTGCACCTT 5694 Query 7126 CGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT--C 7183 ||||| || ||||| || ||||||| ||||| || ||||| | | || |||| | Sbjct 5695 GGGGATCCGAGTCGAGCCGCCGACCAGGACGATCTCGTTCACCT--GGTTCTTCGACAGC 5752 Query 7184 TTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACAC 7243 || ||||| || || || |||| || ||||| || || || || || ||| Sbjct 5753 TTCGAGTCCCGCAGCACTTGCGCGACGGGCTCCATCGTCTTGCGAAAGAATTCTCCGCAC 5812 Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || ||||||||||||| | | ||||| | ||| || | ||| Sbjct 5813 AGATCCTCAAACCGCGCACGGGTAATGGTCGAGTTTAAATCGATGCCATCCAGCAGCGAG 5872 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 ||||| |||| | | || |||| | || || || || || || || ||||||||| Sbjct 5873 TCAATCTCAAGGTACGCCTGCGCCGAAGTGGACAAGGTGCGTTTGGCTCGTTCACACGCC 5932 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | ||| || || || ||| |||| | | || || || || || || || Sbjct 5933 GTGCGGAGACGCCGCAGAGCGCGCTGGTTCGCCGTCATGTCCTTGCGGTGCTTGCGCTTG 5992 Query 7424 AACTCTTC---AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| | ||| || | ||||| ||||| || |||||||| Sbjct 5993 AACTCGGCCACAAAGAACT--CGACC-AGACGGTTGTCGAAGTCTTCGCCGCCCAAGTGC 6049 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || ||||| ||||| || || || ||||| ||| ||||||| | | || ||| || Sbjct 6050 GTGTCGCCCGCCGTCGCCTTCACCTCGAAGATGCCTTCTTCAATCGTAAGCAGCGAGACG 6109 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 |||||||| || || || || ||||| || || ||||| ||| | |||| ||| Sbjct 6110 TCAAACGTCCCGCCGCCTAGATCAAAGATCAGCACGTTGTGCTCGCCTCCTTT---CTTG 6166 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 || || || || || || || || ||||| || || || || || || || ||||| Sbjct 6167 TCAAGCCCATAGGCAATCGCAGCAGCCGTCGGCTCGTTGATGATGCGTAGCACGTTCAAA 6226 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 |||||||| | | | || || || ||||| || || ||||| ||||| ||||||||||| Sbjct 6227 CCAGCAATGGCTCCAGCGTCCTTGGTCGCCTGCCGCTGCGAGTCGTTGAAGTAGGCCGGC 6286 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 ||||| || ||||||| | | || | ||| |||| ||| || || | || ||| Sbjct 6287 ACCGTCACCACCGCGTTCTTCACCTGCTTCCCGATGAACGCCTCGGCCACCTCGCGCATC 6346 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA 7840 ||| | || ||||| || || || || || | | ||| ||| | || || || || Sbjct 6347 TTGATCAGCACCATGGACGAGATTTCCTCGGGCTGGAACGTCTTCTTCTCGCCCTTGAAC 6406 Query 7841 TCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTC 7900 | || ||| | ||||| | | | | ||| || | || | ||| ||| | || Sbjct 6407 TGCACCACAACCTGCGGTTTGTTCTCCGGGCCGCGGGTCACTTGGAACGGCCAGTGCTTG 6466 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 | || || || | |||||| ||||| | ||||| | ||||| |||| || Sbjct 6467 ACGTCCGACTGCACTTCCGGGTCCGTGAACTTGCGCCCGATCAACCGCTTGACATCGAAC 6526 Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 || ||||| | | |||||| || |||||||| || ||||| ||||| || || || Sbjct 6527 ACCGTGTTGTGCGCGTTCATCGCCACCTGGTTCTTGGCGGCGTCGCCGATGAGGCGCTC- 6585 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 ||||| ||||| |||||||| ||||| || || || || || || ||||| || Sbjct 6586 --CGAGTCCGTGAACGCCACGTACGACGGGGTAGTGCGGTTGCCCTGATCATTCGCGATG 6643 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 || || || |||||||| ||||| ||||| |||||||| || || || || | ||||| Sbjct 6644 ATCTCCACACGGTCGTTCTGCCACACGCCCACGCACGAGTAAGTCGTGCCCAGGTCAATG 6703 Query 8141 CC 8142 || Sbjct 6704 CC 6705 >seq389 Length=32118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 184205 ACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCA 184264 ||| | ||||||||||| ||| | || || | ||| || ||||||||||| || ||| Sbjct 15846 ACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCGTACTGGTCA 15905 Query 184265 CGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATA 184324 || |||||||||| ||| ||||| | || |||| || || ||||| |||||||| | | Sbjct 15906 CGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCTTCGGTCAAA 15965 Query 184325 ATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGG 184383 ||||| | |||| | ||| | | | |||||| ||| || || || || || || Sbjct 15966 ATAAGCGAGCACTCAGTTGAGCGGGGGCCACCGGCAAGATTAGCGTCCTCAAGCTTAGG 16024 >seq440 Length=29033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/296 (67%), Gaps = 11/296 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||| ||| || || || | || | ||||| || ||||| || Sbjct 14789 TCGAAGTCCTCGCCACCCAGGTGCGTGTCTCCGCCCGTGGACTTGACCTCGAAGATGCCG 14730 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 14729 TTCTCGATCGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATCAGCACG 14670 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || || |||| | | |||| | || || ||||| || | || ||||| Sbjct 14669 TTGCAAGCCGAGCCGTCCGTGCCGGCGTTCGTGTCCAGGCCGTAGGCCAGGGCAGCCGCG 14610 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| || ||||||||| || | | || || || || Sbjct 14609 GTGGGCTCGTTGATGATACGCTTGAC-GTCCAGGCCAGCGATGGAGCCGGCGTCCTTAGT 14551 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA 7742 | || || ||| ||||| |||||||| || || || || ||||| | || || Sbjct 14550 GGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACGGTCACCACCGCCTGCGAGA 14495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635089952353480