Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1233 190 3e-43 seq588 127 3e-24 seq1009 123 3e-23 seq389 96.9 4e-15 seq1588 93.3 5e-14 >seq1233 Length=11135 Score = 190 bits (210), Expect = 3e-43 Identities = 365/535 (68%), Gaps = 5/535 (1%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| || || || ||||||||||| || || || | || || |||| Sbjct 6600 TTCACGCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 6659 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||||| | || | |||| || || ||| | ||||| |||| ||| |||| | Sbjct 6660 TGCTTCCTGCTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 6719 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || || ||||| |||||||| || || ||||| || ||| || | || | ||| Sbjct 6720 TGCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 6779 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| || |||| || || || || |||| || || || ||||| ||| Sbjct 6780 ACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCTGCGC 6839 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || || |||| ||| |||||||| || |||| | || | |||||||| || || Sbjct 6840 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTC 6899 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || |||| || ||||| |||||||| || | | |||||||| || | || ||| Sbjct 6900 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAAC 6959 Query 112062 CAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 112121 || || | ||| | ||| ||||| || |||| ||| |||||| | || |||||| Sbjct 6960 CACGGCAACGAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTC 7019 Query 112122 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCC 112181 ||||||||||| || ||| | |||||| ||| || || || || || | || ||| Sbjct 7020 TTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCC 7079 Query 112182 GGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || | ||| ||| | ||| || |||||||| ||||||||| ||||||||| Sbjct 7080 GGACTGTACGAGTGCTG-GGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAG 7133 >seq588 Length=22666 Score = 127 bits (140), Expect = 3e-24 Identities = 191/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| |||| |||||| | || || | |||||| | Sbjct 21302 CTCATTGACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAG 21361 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || || | |||||||| | ||||| | | ||||| || | || | Sbjct 21362 ACCATCCCGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGC-GT-G 21419 Query 102168 CGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || |||| | ||||| || | || ||||| || ||||| ||||||||||| | Sbjct 21420 TGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGG 21479 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||||||| |||| | |||||||||||||| || |||||||| |||||| |||||| Sbjct 21480 GCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCT 21539 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGG 102313 | || ||||| ||| ||||||||||| Sbjct 21540 CGAATGAGCTCATCAGCCGTGACGAGGG 21567 >seq1009 Length=13826 Score = 123 bits (136), Expect = 3e-23 Identities = 189/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | |||||||| || ||| | || ||| || Sbjct 3913 CTCATTGACACGTACATCAAGGACACCGTGGAGAAGAACCACCTCCTGTGTGCTATCGAA 3854 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 102166 || | || || | || |||||||| | ||||| | ||||||| || | || Sbjct 3853 ACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTG 3794 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||| ||| | ||||| || | || ||||| | || ||||| ||||||||||| || Sbjct 3793 TCGT-CCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGG 3735 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||||| ||| | | | |||||||||||||| || |||||||| || ||| ||||||| Sbjct 3734 CTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTC 3675 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| | ||| ||| |||||||| Sbjct 3674 GAACGAGATGATCAGTCGCGACGAGGG 3648 >seq389 Length=32118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||||||||||||||| || | ||| |||||||| | ||| |||| | |||| |||| Sbjct 14758 AACCCGTACCGATACCTTCAGCACCATTCACGAGCAGCATCGGGATGATAGGCACGTAGT 14817 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC-TCT- 175956 | | || |||| ||| |||||||| || ||| | | | |||||| ||| Sbjct 14818 AAACGGGTTCAACTGGGAATCCATCGTCGTCGGCGTAGCGCAACAGCGCATCATCGTCTT 14877 Query 175957 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 176015 ||| || | | || | | |||||| ||| || ||||| || | | || Sbjct 14878 CGGGG--AATACCAAGCGCGTGTGCTTTTGC-AGCAACGTGAAGATGTAACGAGGGCTAG 14934 Query 176016 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 ||||||||||| ||| | || |||||||||||||| |||| | ||||| || Sbjct 14935 CGGCATCCTTACCTCCCTGCAACCGGGTACCAAACTGACCTGACGGATACAGAAGCGGGA 14994 Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG---AGAGAGA 176132 ||||| || |||| | |||| | ||||| |||||||| || || | || || Sbjct 14995 GGTTGTTGGAGCCCACGAAGTCCTGCGCCATATTGACAATAGT---CGAGTGTAGCGATG 15051 Query 176133 CTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCA 176192 |||||||||||||||| || | | ||| | | |||||||||| ||||| |||| Sbjct 15052 CTTCACCGTGGTGGTAGGCTGTGTGCTCACTGCAGTAGCCCGCCAACTGTGCCACCTTCA 15111 >seq1588 Length=8151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 278/425 (65%), Gaps = 23/425 (5%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| || ||||| ||||| || || |||| || | ||||| ||||| |||| || Sbjct 2752 GATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTT 2811 Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 ||| |||| | || || | || | ||| | ||| ||||||||||| || | Sbjct 2812 CGTGCCGGCAAGCACCACCACGCCCTCACTCGAGTTGAAA-CCATCCATCTCGACCAGCA 2870 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTG--CGT 16052 ||||||| | || | ||| || || || || |||||| || | | | | Sbjct 2871 GCTGGTTCAGCGTGTTTTCACGCTCGTCGTT---------ACCACCCGAGAAGTTACCCT 2921 Query 16053 TGCT---TTC-----CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT 16104 |||| | | |||| ||||| || ||||| ||||| || || || || |||| Sbjct 2922 TGCTACGTGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTG 2981 Query 16105 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 16164 | || || | | || ||||| || ||||| | ||||| || || |||||||| | Sbjct 2982 CACGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGA 3041 Query 16165 CAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 16224 || | || | ||||| || ||| || || ||| ||||| || |||| | Sbjct 3042 TGAAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCG 3101 Query 16225 CGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGG 16284 | || ||||||||||| ||||| ||| ||| |||| || ||||| || ||||||| Sbjct 3102 CCAGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGG 3161 Query 16285 CGCCA 16289 | ||| Sbjct 3162 CACCA 3166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620700523165840