Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1588 174 2e-38 seq1233 118 1e-21 seq1009 100 3e-16 seq112 100 3e-16 seq588 87.8 2e-12 >seq1588 Length=8151 Score = 174 bits (192), Expect = 2e-38 Identities = 334/484 (69%), Gaps = 19/484 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || || || ||||| || || || | || | ||||||||||| | ||||| Sbjct 2753 ATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTTC 2812 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 || |||||| || || | ||| |||| | || |||||| ||||| || || Sbjct 2813 GTGCCGGCAAGCACCACCACGCC---CTCACTCGAGTTGAAACCATCCATCTCGACCAGC 2869 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGCCGAA 11667 |||||||| | ||| | ||||||||| ||||| ||| |||| | ||| | Sbjct 2870 AGCTGGTTCAGCGTGTTTTCACGCTCGTCGTTACCACCCGAGAAGTTACC-CTTGCT--A 2926 Query 11668 CGCTTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 || | | | | ||||| || || |||||||||||||| |||||||| || ||||| Sbjct 2927 CG-TGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTGCACG 2985 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| | ||| || ||||| ||||| || || || || ||||||||||| | ||| Sbjct 2986 GGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGATGAA 3045 Query 11787 GTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | || | | | || ||||| ||| || || ||| ||||||||| |||| || | Sbjct 3046 ATCTGAGCCGGAAATGCTGAA-GAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCGCCA 3104 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | ||||||||||| ||||| || | |||| |||| || || || |||||||||||||| Sbjct 3105 GCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGGCAC 3164 Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | | |||||| | || ||||||||||||| |||| | |||| || Sbjct 3165 CAAGCTCTGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTTCT 3224 Query 11966 TGGC 11969 |||| Sbjct 3225 TGGC 3228 >seq1233 Length=11135 Score = 118 bits (130), Expect = 1e-21 Identities = 1037/1656 (63%), Gaps = 59/1656 (4%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| |||| || ||| Sbjct 8224 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTTG 8165 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 || ||||| | || | ||| | ||||||| ||| ||| | |||| Sbjct 8164 CTAATGGTCGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCA 8105 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || ||||| | || ||| | | ||| || | || ||||| || ||||||||| Sbjct 8104 CGGTCAGCAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTG 8045 Query 109594 TTCTTGATATCATCGGGAATG---TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | ||||| | || || ||| | ||| || || | || ||||| | |||| Sbjct 8044 TCCTTGACGTTGTCAGGGATGGATTTCACC---TTCTGCACGGAACCACCGTCGTTCAGG 7988 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG-TCAACAAGATG 109709 || | | || ||| || ||||| || | || | || || ||| || | | Sbjct 7987 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGG-TA 7929 Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 |||||| || | || ||||| ||||| || || ||| ||||| | |||||| Sbjct 7928 CTTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTA 7869 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 || |||| ||||||||||||| ||||| || ||||| ||||| || |||||||| || Sbjct 7868 CGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGC 7809 Query 109830 CATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTA--CCCGCTCACG--CATTGCGTCCC 109885 || ||||| ||| || | || || |||| | || || | || || ||| Sbjct 7808 CACCAGAAGCGAGTTCCGAATTCC----GTGTTTAATCACGTTCTCCTTCAGCGCAGCCC 7753 Query 109886 AATCATAACGACC--ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACC 109943 | | | |||| || || | | ||||||| || || | | ||| Sbjct 7752 AGTTCCACAGACCCGACGAAGGCGTGATGC-----CCCACATGTCGAACTGGAAGATACC 7698 Query 109944 CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGA 110003 || ||||| || |||| ||| ||||||||| || ||| ||| | ||| Sbjct 7697 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTCCAT 7638 Query 110004 TGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG---CG 110060 || | ||| | | || | || || ||||| || || | ||| |||| || Sbjct 7637 CGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT--CATGT-TGAGCTCACG 7581 Query 110061 AGACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 || || || | ||||| | | || || | |||| ||| | || || |||||||| | Sbjct 7580 AGCCTGCTCGCTCTCGAACGCGTAGTTCATCA-GAATGAACGCGTCGGCCAGACCCTGCA 7522 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 |||||| || | ||||| || |||||| || || || | |||||||| Sbjct 7521 CACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAGT 7462 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 ||||| || || ||| ||||| || ||||| ||| | || | || | Sbjct 7461 AGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCACCTCGTACAGCT 7402 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 | | ||| | |||| |||| || | || | ||||| || || | ||||| | Sbjct 7401 TCTGGTAGTTGAACACAC-CGTC--CTCCTCCACGAACTTGGGCAGGGCCACCGACGCCA 7345 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTT 110357 | |||||||| | ||| || | || ||||| |||| | || |||||||| Sbjct 7344 GGTTGCACACCGCCACCTCATCG--GGCGACGTGTACTCCATGACCTCGCAGCACAAGTT 7287 Query 110358 GGAACTCTTA---ATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTT 110414 | ||| ||| |||| ||||| ||| || || ||| |||| || ||||| Sbjct 7286 G---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTT 7230 Query 110415 ATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATC 110474 || |||||| | || || || || |||| | | || ||||| ||| || | Sbjct 7229 GTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCA--CAGC 7172 Query 110475 GGC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 || |||| | || |||| || | || ||| ||||||||| ||| | | Sbjct 7171 TGCTGGGCGTTAATGGTCTTGCGG--GCCCGGCCCTCCGTCTCGTACTTCTCGTAGAGGG 7114 Query 110531 CCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 ||||||| || | || | ||| || | || || || | || ||| ||||| ||| Sbjct 7113 CCTCAAACTCGTCCCCCCAGCAC-TCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGG 7055 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||| || ||| ||| |||||||||||||| || || || | ||| | ||| || Sbjct 7054 CTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAG 6995 Query 110650 AAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 || ||||| || || | || | || | || ||||| ||| || |||| || || Sbjct 6994 AACAGGTCGCGCGCCCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAACTC 6936 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACC 110765 | | || | |||||| || || || |||| |||| || ||||| || | || Sbjct 6935 GAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCC 6876 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| || ||||| || ||| | ||||| || | ||||| || || || |||| Sbjct 6875 GCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATT 6816 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 ||| || || || || | || | || |||| || |||| ||| || || Sbjct 6815 GGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTGAT 6756 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 || || || || |||||||| || || |||| |||| || | || || || Sbjct 6755 GCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 6696 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 || || || || ||| |||| | || ||||| || |||| ||| ||||| ||||| Sbjct 6695 CTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGT 6636 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || |||||||| || || ||||| || |||| Sbjct 6635 GCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAA 6600 >seq1009 Length=13826 Score = 100 bits (110), Expect = 3e-16 Identities = 374/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | | | |||||||| || ||||| || | ||| ||||| | ||||| Sbjct 3342 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 3401 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327 |||| || || || ||| ||| |||| | ||| | | ||| ||||| Sbjct 3402 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACGG 3461 Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387 || | || ||||||| || | | |||| ||| ||||| || || || | | Sbjct 3462 TCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCACC 3521 Query 119388 GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGA 119447 ||||| | ||| || ||| | | ||| |||| |||||| || |||||| ||| Sbjct 3522 GGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTGG 3581 Query 119448 A-TAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GC-AAATT 119502 | | | ||| || | ||||| || || || | || | | || |||| Sbjct 3582 ACTCGGCTCTC-CGGCAGCTTGTT---CACCAGCTTGGAGTACATGAGGCATGCGAAATC 3637 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || | ||||| | || ||| ||| | ||| || ||||| || |||||||||| Sbjct 3638 CGTGTGCATGCCCT-CGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATGA 3696 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||| |||| | ||||| || || |||||||||||||||| Sbjct 3697 GGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCTCCA 3756 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTG 119678 | |||| || || | |||||||| | ||| ||| | | |||| |||||||| Sbjct 3757 CCGAGGCAAACGCCAGCAGACGCTCCG-GGTAGGACGACACACGCGGGTCGCACCACTTG 3815 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||||||||| || || | ||| |||| |||| ||| || | || || Sbjct 3816 AGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGTGG 3875 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 ||||| || | ||||| || || | |||||||| Sbjct 3876 TTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 3913 >seq112 Length=54739 Score = 100 bits (110), Expect = 3e-16 Identities = 193/281 (69%), Gaps = 13/281 (5%) Strand=Plus/Plus Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTC-TGTTCACGCTCATCGTTGG 11647 ||||||||||||||| || ||||||||||||| |||| | |||| | | || Sbjct 33931 GTCGAAACCGTCCATCTCCACCAGAAGCTGGTTGAGCGTCATCTTCATGGCC-----TGC 33985 Query 11648 AGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGA 11707 | | | | | | |||| | ||||| |||||||||||| |||||||| | || Sbjct 33986 TGCTCCTTCAGCTT-----ACGCGTTCCACCGATAGCGTCAATCTCGTCGATGAAGATGA 34040 Query 11708 TACACGGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 | |||||| || | | || | | ||||| || ||||| || || ||| || ||| Sbjct 34041 TGCACGGTGCCTTC-CGCTTGGCCGACTCGAACAGGTCACGCACGCGACGCGCGCCCACA 34099 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || ||| |||| || |||| | | |||| | | | ||| || || | ||| Sbjct 34100 CCCACGTACATTTCCTCGAACTCCGATCCAGACGAGTAGAAGAACGGTACGCCTGCCTCG 34159 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGG 11867 |||||||| ||||||||||| || ||||||||||| ||||| Sbjct 34160 CCAGCGATAGCTCGAGCGAGCAGCGTCTTACCCGTGCCAGG 34200 >seq588 Length=22666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 373/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 21873 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 21814 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTT-GACCAACTTGTTTCAGAAGACG 119326 |||| || || || |||| ||| |||| | | ||| | || ||| || || Sbjct 21813 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTA-CAGCAGGCG 21755 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| |||| | |||| |||| |||||||| || | | | || Sbjct 21754 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCA-ACTCCA 21696 Query 119387 C-GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | ||||| | ||| | | ||| | | ||| ||| ||||||| || ||| || || Sbjct 21695 CCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGT 21636 Query 119446 GAATAGTTTCTGTC-GATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAAT 119501 | | | || || | | ||||| ||| | || | || | | || || Sbjct 21635 GCAC-GCGGCTTTCCGGCAGCTTGTTGATCA---GCTTGGAGTACATGAGGCAAGCGAAG 21580 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | || || || || |||||||||||| ||||| || || |||||| Sbjct 21579 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 21520 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 || || | ||||| ||||| ||||| | || || || || |||||||| |||||| Sbjct 21519 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 21460 Query 119622 ACACAGGCGAAAGCGAATAGACGCTC--AGCAAAAGGTC-GAGACTTGTCGAACCACTTG 119678 || ||| || || | |||||||| | | ||| | | | |||| ||||| || Sbjct 21459 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCACCACCTG 21400 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||||| || || | | ||| |||| || | |||||| | || || Sbjct 21399 AGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGGTGG 21340 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 | ||| || |||| ||||| || || | |||||||| Sbjct 21339 TCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAG 21302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588936266206600