Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1009 116 4e-21 seq588 107 2e-18 seq1588 96.9 4e-15 seq35 89.7 6e-13 >seq1009 Length=13826 Score = 116 bits (128), Expect = 4e-21 Identities = 335/505 (66%), Gaps = 18/505 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||| |||| |||||||||||||| || | || || | ||||| Sbjct 3342 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 3401 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| ||||| ||||| |||| | || | ||| |||| | || || ||||| Sbjct 3402 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCAGACG 3460 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 3461 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 3520 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| ||| |||| | | |||||||| || || || |||||| |||| Sbjct 3521 CGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTG 3580 Query 117225 GA-TAGTTTC---GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 || | | || || || || | || || |||| || | | | || | Sbjct 3581 GACTCGGCTCTCCGGCAGCTTGT---TCACC---AG-CTTGGAGTACATGAGGCATGCGA 3633 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || || || | || || ||||||| || || |||| Sbjct 3634 AATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCA 3693 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 |||| || |||||||| | ||| | | | ||| || || || ||||||||||| |||| Sbjct 3694 TGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCT 3753 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 |||| | |||||||| | || ||||| | | |||| ||| || | ||| |||| Sbjct 3754 CCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGGGTCGCACCAC 3812 Query 117457 TTCATTGCCCATTTCGCCTTCTTCT 117481 || | |||||| || || ||||||| Sbjct 3813 TTGAGTGCCCAGTTGGCTTTCTTCT 3837 >seq588 Length=22666 Score = 107 bits (118), Expect = 2e-18 Identities = 303/456 (66%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 21873 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 21814 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| ||||| | || | ||| |||| | || || || || Sbjct 21813 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTAC-AGCAGGCG 21755 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||| | | |||| | | |||||||||||||| | | | || Sbjct 21754 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCA-ACTCCA 21696 Query 117165 T-GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || ||| || ||| Sbjct 21695 CCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGT 21636 Query 117224 GGATAG----TTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | || ||| || || || | || | | | ||| || | | || Sbjct 21635 GCACGCGGCTTTCCGGCAGCTTGTTGATCA-GCTTGGAGTACATGAGG--CAAG-CGAAG 21580 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| | ||||| || ||| || || ||||| ||||||| || || |||||| Sbjct 21579 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 21520 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | |||| |||||| || || ||||||||||| |||||| Sbjct 21519 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 21460 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || ||||| || | || ||||| | | ||||| Sbjct 21459 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG 21424 >seq1588 Length=8151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 279/427 (65%), Gaps = 27/427 (6%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| || ||||| ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 2752 GATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTT 2811 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301 ||| |||| | || || | || ||| | | |||||||||||||| || Sbjct 2812 CGTGCCGGCAAGCACCACCACGCCC---TCACTCGAGTTGAAACCATCCATCTCGACCAG 2868 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTG--C 9357 || ||||| | || | ||| || || || || |||||| || | | | Sbjct 2869 CAGCTGGTTCAGCGTGTTTTCACGCTCGTCGTT---------ACCACCCGAGAAGTTACC 2919 Query 9358 GTTGCT---TTC-----CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT 9409 ||||| | | |||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 2920 CTTGCTACGTGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATT 2979 Query 9410 TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 | | ||||| | || ||||| || || | | ||||| || || |||||||| Sbjct 2980 TGCACGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTC 3039 Query 9470 CACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9529 | || | || | ||||| || ||| || || ||| ||||| || |||| Sbjct 3040 GATGAAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTT 3099 Query 9530 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTT 9589 || || ||||||||||| ||||| ||| ||| |||| || |||||| || ||||| Sbjct 3100 CGCCAGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTT 3159 Query 9590 GGCGCCA 9596 ||| ||| Sbjct 3160 GGCACCA 3166 >seq35 Length=81521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 260/391 (66%), Gaps = 36/391 (9%) Strand=Plus/Minus Query 169152 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 169211 |||||||||| ||| || | || | | ||||||||||||||| |||||| | ||| Sbjct 3105 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 3046 Query 169212 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTGGTAGTCTT-- 169269 ||||| ||| ||||| || | || ||||| || | |||||||| || Sbjct 3045 TGATCTGCCATGATCATCAGGTGCCCGTAGCGCAGGCC--------CTTGGTAGACTCGT 2994 Query 169270 -TTCCTTG------TTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTT 169319 || || | |||| | |||||| |||||| |||| ||| ||||| ||| Sbjct 2993 ATTTCTGGCCGTACTTGAGG--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTC 2938 Query 169320 -----GATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAG 169374 ||| || | |||| ||| || || || || || || || || |||| Sbjct 2937 TTCACGATTTGTG-TGTG--ACTT--GCTTCACGAACGTTGAGCATTTTACCTCGCAGAG 2883 Query 169375 GAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCG 169434 | ||||||||||||| ||| | ||||| |||| ||||| | || |||| ||||| | Sbjct 2882 GGAAGACGCCATAGTAATCTCTGCCAACAACGGCAAGACCACCCACGGCAACCGTTTTGG 2823 Query 169435 CTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGAT-TGCGCCGTACCCGCCTTG 169493 | ||||| || ||||| | ||| || || || | | | | | ||| || || || || Sbjct 2822 CGGAATCTCCTTCCGTAAGAATCAGAGTGCA-ATCCTTGCTCTTCGCGGTGCCAGCGTTA 2764 Query 169494 TTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 || || || |||| |||||| ||||| |||| Sbjct 2763 TTGGCATCATCCAGCTTGGGGATACCGGTAA 2733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589940998420280