Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq989 102 5e-17 seq312 96.9 2e-15 >seq989 Length=14097 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 1345 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1286 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| || ||||| ||||| Sbjct 1285 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 1226 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| || ||||| || ||||||| Sbjct 1225 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 1171 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 1170 CAAAGATCTGCATGATTC 1153 >seq312 Length=34779 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 25069 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 25010 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||| ||||| || ||| Sbjct 25009 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG 24950 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| ||||||||||| Sbjct 24949 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 24890 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 24889 AAGATCTGCAT 24879 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | || | || |||||||| || || || || Sbjct 24385 TCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 24326 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||| ||||| || ||| Sbjct 24325 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG 24266 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| ||||||||||| Sbjct 24265 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 24206 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 24205 AAGATCTGCATCTT 24192 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | || | || |||||||| || || || || Sbjct 24613 TCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 24554 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||| ||||| || ||| Sbjct 24553 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG 24494 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| ||||||||||| Sbjct 24493 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 24434 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 24433 AAGATCTGCAT 24423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | || | || |||||||| || || || || Sbjct 24841 TCCTTCTGGATATTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 24782 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||| ||||| || ||| Sbjct 24781 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG 24722 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| ||||||||||| Sbjct 24721 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACG 24662 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 24661 AAGATCTGCAT 24651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324612246920616