Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1233 432 7e-116 seq588 248 2e-60 seq1009 244 2e-59 >seq1233 Length=11135 Score = 432 bits (478), Expect = 7e-116 Identities = 1217/1842 (66%), Gaps = 90/1842 (5%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| |||| ||| | |||||| | || || || Sbjct 8224 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTT- 8166 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGG 212714 ||| ||| || |||| | |||| | ||| || |||||||||||| Sbjct 8165 ----GCT-AATGGTCGGGTCGGCAATGTGG---------ATGTTGAGCGACTGACTCTGG 8120 Query 212715 TCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCAC 212774 ||| | | | | |||||| | || ||| | | | |||| || ||||||| Sbjct 8119 CAAATGTAGGCACCACGGTCAGCAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCAC 8060 Query 212775 ACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCC 212834 || |||||| | | || |||| || || |||| | | |||||||| || || Sbjct 8059 ACCGTCTTGTACTTGTCCTTGACGTTGTCAGGGATGGATTTCACCTTCTGCACGGAACCA 8000 Query 212835 CTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAG 212890 | || | |||| ||| ||||| || |||||| |||| | || ||| Sbjct 7999 CCGTC---GTTCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCA-GCTCGATCAG 7944 Query 212891 GCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTA 212950 | | | ||||| ||| || ||| ||| ||||| | ||||| | | | ||| Sbjct 7943 CTCCCTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTA 7884 Query 212951 AAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGC 213010 | ||| || ||||| ||||||||| ||| ||||| ||||| ||||| ||||| || Sbjct 7883 CATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGC 7824 Query 213011 TGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGC 213068 || |||||||| |||||||| || ||||| | |||||| | || | | | | Sbjct 7823 CGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTTTA---ATCACGTTCTC 7767 Query 213069 CGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | ||| | ||||||| ||| ||||| | | | | | | | ||||||||| Sbjct 7766 CTTCAGCGCAGCCCAGTTCCA-----CAGACCCGACGAAGGCGTG-ATGCCCCACATGTC 7713 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| ||||| || ||||| | || |||||| | | ||| |||||| |||| Sbjct 7712 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTC 7653 Query 213188 CTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCT 213247 |||||| | ||| |||| || || || ||||||||||||||| || || || | | | Sbjct 7652 CTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCAT 7593 Query 213248 GTTGAGCTTCTTGGCCT-CTGG-----GGACGTGAAGGGCATCATCATGCGTTGGAACAC 213301 |||||||| |||| || | | ||| | || ||||| ||| ||| | Sbjct 7592 GTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTTCATCAGAATG------AACGC 7539 Query 213302 ATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGC 213360 || ||||| ||||| || ||||| || | || | ||| | || ||| |||||| | || Sbjct 7538 GTCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGC 7479 Query 213361 ACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTT 213420 |||| ||| |||||| ||||| || || | |||||||||||||||||| |||| | Sbjct 7478 -CTCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCT 7420 Query 213421 TGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAG 213480 | || | | ||| | || || |||||||| | || |||| ||| |||| | Sbjct 7419 TTACCACCTCGTACAGCTTCTGGTAGTTGAACACACCGTCC---TCCTCCACGAACTTGG 7363 Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATG 213539 ||||||| | ||||||||||| || |||||||| | | | | | |||||||||||| Sbjct 7362 GCAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGAC-GTGTACTCCATG 7304 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | |||| ||||| |||||| | |||||||||||||||||||| ||||| ||||| | Sbjct 7303 ACCTCGCAGCACAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGG 7244 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||||| | |||||||| |||||| |||| ||| ||||| | ||||| |||| || Sbjct 7243 TTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATG 7184 Query 213660 TGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTA 213718 | ||| || | | ||| || | | || | | |||| | | | |||||| Sbjct 7183 GCGAACCACAGCTGCTGGGCGTT----AATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTA 7128 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 || |||||||| | | || |||| |||||| | || |||||| ||| | | | Sbjct 7127 CTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGA---GCTTC 7071 Query 213779 ---GGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 ||| || | |||||||| | || | ||| ||| |||| |||||| || || | Sbjct 7070 GTTGGGGCAGAACAGGCTCCATTTGCCATTGGACTC-GACCCTCTTCATGAAGAGATCGG 7012 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTT 213891 ||||||| |||||| ||||||||| | | || | ||||| || ||| | Sbjct 7011 GGACCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCTCGT---TGCCGTGGTTCT 6955 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 |||| || || || || || || | ||| |||||||||||||||| ||||||||| || | Sbjct 6954 TGCGGAGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACG 6895 Query 213952 CGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 |||| | ||| ||||||||||||||| | ||| |||||| | ||||| Sbjct 6894 AGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCA 6835 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | ||| | | ||| |||||| ||||| || || || || | || ||| | Sbjct 6834 GCATGGGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGC 6775 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | |||| |||| || || ||||| ||||| |||||||||| ||||| || Sbjct 6774 GGATGTTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCT 6715 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188 | | || || |||||| | ||| ||| || | | ||||| |||||| || Sbjct 6714 TGAGCGTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACG 6655 Query 214189 AGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACT 214248 | ||||| || | | || ||| | |||||| ||||||||| | || || | | |||| Sbjct 6654 ACAGCTGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACT 6595 Query 214249 TGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTA 214308 | | | |||| ||| ||||| || | | |||||||| ||||||||| | Sbjct 6594 TCTGGCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCA 6535 Query 214309 GAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCT----- 214362 | || ||| | ||| | ||| ||||| |||| ||| | |||| |||| Sbjct 6534 GCGC-CACGCGCATGATCATCTGCTGCGGCCGCTCCA--CCACCTT----CCCCTGCACG 6482 Query 214363 -TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 || |||||| |||||| || |||||||| || |||||| Sbjct 6481 CGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAG 6440 >seq588 Length=22666 Score = 248 bits (274), Expect = 2e-60 Identities = 561/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 21874 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 21815 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | || ||||| | | ||||||| | Sbjct 21814 CCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCG 21755 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||||| ||||||| |||||| || || | ||| Sbjct 21754 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCAC 21695 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | |||||||| | Sbjct 21694 CGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGTG 21635 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| || | | |||||| ||| ||||| || | | ||| || ||||| Sbjct 21634 CACGCGGCTTTCCGGCAGCTTGTTGATCAG---CTTGGAGTACATGAGGCAAGCGAAGTC 21578 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||| ||||| |||||||||||| | || ||||||| |||||| ||||||| Sbjct 21577 GGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATGAG 21518 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||||||||| |||||||| Sbjct 21517 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCCAC 21458 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || || || || || | ||| | | || | | | ||| | ||| Sbjct 21457 GGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTC---GCACCACCT 21401 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| || |||||| ||| ||| || || ||||| ||||| || | || | Sbjct 21400 GAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGGTG 21341 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 | ||| | ||||| | || || | |||||||| | ||| | ||| || Sbjct 21340 GTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCTCCGA 21284 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| ||||||||| | ||||| ||||||||| Sbjct 21283 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCAC 21224 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || ||| || ||| ||||| || || || || || ||||||||||| Sbjct 21223 TTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAA 21164 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 || || || || || | ||| || |||||||||| ||||| |||| | | | Sbjct 21163 AGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAGGTTCGCCCAGTCATTGAG 21104 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | ||| ||| | || || | ||||||||||| || || || |||||||| Sbjct 21103 GTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACAT 21044 >seq1009 Length=13826 Score = 244 bits (270), Expect = 2e-59 Identities = 565/844 (67%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 3341 GTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 3400 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || |||| | | |||||| | Sbjct 3401 CCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACG 3460 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| || ||||||||| || || ||| Sbjct 3461 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 3520 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||| | ||| |||| ||| || || | ||| |||| | Sbjct 3521 CGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTG 3580 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || ||| ||| | | ||||| ||| ||||| || | | ||| || || || Sbjct 3581 GACTCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCATGCGAAATC 3637 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| || ||||| | | |||| ||||||| ||| |||||||||| Sbjct 3638 CGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATGAG 3697 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| | | || ||| ||||| ||||||||||||||||||| Sbjct 3698 GCCGCGCTTCTTGAGCCAGAAGACCG-AGCAAAAGGAGCCCGAGAAGAAGATGCCCTCCA 3756 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGG 48317 | | || ||||| || | ||| | | || | | | ||| | ||| Sbjct 3757 CCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACACGCGGGTC---GCACCACT 3813 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGA 48374 || ||||||| || ||||||| || ||| || ||||| || || || | ||| | Sbjct 3814 TGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGT 3873 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | ||||| ||| | | |||| | || || | |||||||| | ||| | || Sbjct 3874 GGTTCTT---CTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCT 3927 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||| | ||||| ||| | Sbjct 3928 CCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGCACTT 3987 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||||||| || ||| || ||||||||||||||| || || || ||||| | Sbjct 3988 GCACTTCGTTGCTGAAGTTCATGGCCAGATTCTCATTGACGATGCCGTCACTGGCAGCGA 4047 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || || || || | ||| ||||||||||||| ||||| |||| | | Sbjct 4048 AGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGCTTCGCCCAGTCGT 4107 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||| | ||||||| | || || | ||||||||||| || || || |||| Sbjct 4108 TGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGT 4167 Query 48672 ACAT 48675 |||| Sbjct 4168 ACAT 4171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469956468480