Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1233 255 1e-62 seq588 230 4e-55 seq1009 168 1e-36 >seq1233 Length=11135 Score = 255 bits (282), Expect = 1e-62 Identities = 717/1087 (66%), Gaps = 38/1087 (3%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGC--CTCGGG 221475 || || ||||| |||||||||||| ||||| || ||||||| || | | | |||| Sbjct 7628 CATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCTCACGAGCCTGCTCGCT 7569 Query 221476 A--GAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| | | || ||| ||| || ||| | |||||||||| ||||| || ||||| Sbjct 7568 CTCGAACGCGTAGTTCAT---CAGAAT--GAACG-CGTCGGCCAGACCCTGCACACCGAT 7515 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 || | || | ||| | | ||||||| | ||| || | |||||| || ||||||| Sbjct 7514 CCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAGTAGTTGAC 7455 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || |||| ||||||||||| | || | || || ||||||||| ||||||||||| Sbjct 7454 ATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCACCTCGTACAGCTTCTGGTA 7395 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 ||||||| | ||||| | ||||| || | ||||| || Sbjct 7394 GTTGAACA---------CACCGTCCT------CCTCCACGAACTTGGGCAGGGCCACCGA 7350 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||||| ||||| |||||||| || || |||| |||| ||| || | Sbjct 7349 CGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCGCAGCACAA 7290 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||||| | |||||| ||||||| | || || |||||||| ||||| |||||||| Sbjct 7289 GTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTT 7230 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| ||||| | || ||||| | ||| || |||| || | ||| || | Sbjct 7229 GTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCACAGCTG 7170 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 |||| | | ||| | | | ||||| |||| | | | || ||||| Sbjct 7169 CTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCG---TAGAGGGC 7113 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||||| || || | ||||| ||| || ||| | ||| || | ||| || Sbjct 7112 CTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGGCT 7053 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| | ||| | |||||||| ||||||||| || |||| ||| ||||| | || Sbjct 7052 CCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAGAA 6993 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || || | | ||| ||| ||| ||||| ||| || | || |||| ||||| || Sbjct 6992 CAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAACTCGAA 6933 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | ||| ||||||||||||||||| |||| ||| | | ||| |||||| ||| || Sbjct 6932 CACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCC 6873 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||| ||||| | | || ||||||| | ||| || | || | | || ||||| Sbjct 6872 CTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGA 6813 Query 222253 TCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAGACAT 222309 ||| ||||| ||||| ||||| | ||| | | || | | || | || Sbjct 6812 -CGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTG--AT 6756 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| ||||| |||||| ||||| |||||| Sbjct 6755 GCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 6696 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||| |||| | | |||||| || || ||||||| ||| | | | Sbjct 6695 CTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGT 6636 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG-ACATCAGATCGT 222488 | |||||| || |||||||| | ||||| || ||| | | || | ||| || |||| Sbjct 6635 GCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAG-AACTTCTGGCTCATGAGCTCGT 6577 Query 222489 ACGTCTC 222495 ||||||| Sbjct 6576 ACGTCTC 6570 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 221063 CGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACC 221122 |||| ||| |||||| | ||| ||| |||| || | | || || ||||||||| Sbjct 7978 CGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCACG 7919 Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 | ||| || || | ||||| | | | ||||| ||| || ||| |||| |||||| Sbjct 7918 ATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTACGGCTCGATG 7859 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| |||||||||||||||||||| || || || |||||||| |||||||| || Sbjct 7858 GACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAGC 7799 Query 221243 CTGTTGCGCAGTCCG 221257 ||| || | |||| Sbjct 7798 GAGTTCCGAATTCCG 7784 >seq588 Length=22666 Score = 230 bits (254), Expect = 4e-55 Identities = 561/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || ||| Sbjct 21038 TGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTCGACTTGGTG 21097 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | || |||||| || || ||||| ||||| Sbjct 21098 CACGACCTCAATGACTGGGCGAACCTCACGAACAACGAGCGTCACTTCATCAAGCACGTG 21157 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| |||||||| ||| || ||||| ||||||||||| ||| | || |||| | Sbjct 21158 CTGGCTTTCTTTGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGC 21217 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| |||||| || |||||||| |||||||| |||||||| || Sbjct 21218 AATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAAC 21277 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||| || | ||| || || |||||||| | |||| | |||| Sbjct 21278 ATCCACTCGGAGGTCTA---CTCGCTGCTCATTGACACGTACATCAAGGACGGTGTCGAG 21334 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | ||||||||||| ||| || || ||| || ||| || | ||| Sbjct 21335 AAGGACCACCTGCTGCGTGCCATCGAGACCATCCCGTGCGTCACGAAGAAAGCTCACTGG 21394 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | | |||| | | | || | | || | | ||||| ||| | |||||||| Sbjct 21395 GCGCTCAGGTGGTGCGACCCGCGTGTGTCCT-CCTACCCGGAGCGTCTGCTGGCCTTTGC 21453 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 || |||||||| ||||| ||| || || || ||| | ||||||||||||||| || Sbjct 21454 CGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-TCTATCTTCTGGCTCAAGAAGC 21512 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||||||| || ||| || || |||||||||||| | |||||||| | | Sbjct 21513 GCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCATCAGCCGTGACGAGGGCATGC 21572 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || || ||||| | ||| | | | || || || || || | | || Sbjct 21573 ACACCGACTTCGCTTGCCTCATGTACTC---CAAGCTGATCAAC-AAGCTGCCGGAAAGC 21628 Query 26075 C-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | ||| || || | || ||||||| ||| ||| | ||||| Sbjct 21629 CGCGTGCACGAGATTGTGCGCGACGCTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCG 21688 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | || |||||| | |||||| |||||||||| |||| ||| Sbjct 21689 CTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTG 21748 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAACCCGT 26251 ||||||| ||||||| | |||||| | | | |||||| ||||| ||||||| Sbjct 21749 GCCGACCGCCTGCTGTACTCGCTGGGCGTGTCTAAGATCTACA--ACGCCAAGAACCCGT 21806 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || ||| || | || |||||||||||||| || ||| | || | Sbjct 21807 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGG 21866 Query 26312 GCGACTA 26318 |||| || Sbjct 21867 GCGAGTA 21873 >seq1009 Length=13826 Score = 168 bits (186), Expect = 1e-36 Identities = 550/851 (65%), Gaps = 27/851 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | || |||| Sbjct 4177 TGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTG 4118 Query 25540 AAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 | ||| | ||| |||| | |||| | | |||||| || || ||||| ||| Sbjct 4117 CACGACCTCAACGACTGGGCGAAGCTCA--CGGACAACGAGCGCCACTTCATCAAGCACG 4060 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 || | || ||||| || ||| ||| || || || || ||||||||| | || |||| Sbjct 4059 TGCTCGCCTTCTTCGCTGCCAGTGACGGCATCGTCAATGAGAATCTGGCCATGAACTTCA 4000 Query 25658 CCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 || |||||||| || | | |||| || ||||||||||||||||| |||||||| Sbjct 3999 GCAACGAAGTGCAAGTGCCCG-AGGCTCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 3941 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||||| ||||| || | ||| || || |||||||| | ||| || Sbjct 3940 AACATCCACTCGGAGGTCTA---CTCGCTGCTCATTGACACGTACATCAAGGACACCGTG 3884 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | | || | |||| ||||| || || || || ||| ||| || Sbjct 3883 GAGAAGAACCACCTCCTGTGTGCTATCGAAACGATCCCGTGCGTCCAGAAGAAAGCCAAC 3824 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC---GAGCGGCTGGTAGCC 25890 ||||| | |||||| | | || | | | ||| | ||||| ||| | || Sbjct 3823 TGGGCACTCAAGTGGTGCGA---CCCGCGTGTGTCGTCCTACCCGGAGCGTCTGCTGGCG 3767 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| | |||||||||||||| ||| || || ||| | |||||||||||||| Sbjct 3766 TTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAG 3707 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| ||||| ||| || |||||| | ||||| | |||||||| Sbjct 3706 AAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGAGATGATCAGTCGCGACGAGGGC 3647 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| ||||| || ||||| | ||| | | | || | || || || | | Sbjct 3646 ATGCACACGGATTTCGCATGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGA 3591 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| | ||| || ||| | || |||||| |||| ||| | ||||| Sbjct 3590 GAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTGAGCACGAGTTCGTCTGCGA 3531 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | |||||| |||| ||||| |||| Sbjct 3530 CTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTT 3471 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAAC 26247 ||||| |||| |||||||| | |||||| | ||| |||||| ||| | ||| Sbjct 3470 CGTGGCTGACCGTCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACA--ACGTCAAGAAC 3413 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || ||||||| ||||| | || ||| | | || |||||||||||||| || | | | Sbjct 3412 CCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGT 3353 Query 26308 GTCGGCGACTA 26318 || ||||| || Sbjct 3352 GTGGGCGAGTA 3342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928782137807680