Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1009 116 4e-21 seq588 107 2e-18 >seq1009 Length=13826 Score = 116 bits (128), Expect = 4e-21 Identities = 335/505 (66%), Gaps = 18/505 (4%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAG 65079 ||||||| || || |||||| | || |||| ||| | || ||| |||| | | ||| Sbjct 3837 AGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTGTCG-TCCTACCCGGAG 3779 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | |||||||| | |||||||| ||||||||||| || || || ||| | | Sbjct 3778 CGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTTTGCTCGGTC 3719 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| || || ||||||| || || | || Sbjct 3718 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGAGATGATCAGT 3659 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 || || ||||| | ||| ||| || || | | | || |||| || || | Sbjct 3658 CGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGTACTCCAAG-CT---GGTGA- 3604 Query 65257 AGACCCACTACC---GAAACTA-TCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 || || || || | | |||||| |||||| || || || |||||||| | Sbjct 3603 --ACAAGCTGCCGGAGAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTGAGCA 3546 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTC 65372 | |||| ||| ||| | ||||| | || ||||| |||||||| | |||| Sbjct 3545 CGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTG 3486 Query 65373 CGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTT 65431 | ||||||| |||| ||| | || ||||| || || | |||| ||| | || | Sbjct 3485 CCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTACTCGCTGGGTGTGTCCAAGATCT 3427 Query 65432 GGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACT 65491 |||| ||||| ||||| |||| ||||| | || || | || |||||||||| Sbjct 3426 ACAACGTCAAGAACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACT 3367 Query 65492 TCTTTGAGAAGCGAGTTGGGGACTA 65516 |||| |||| ||| || || || || Sbjct 3366 TCTTCGAGAGGCGTGTGGGCGAGTA 3342 >seq588 Length=22666 Score = 107 bits (118), Expect = 2e-18 Identities = 303/456 (66%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| | | ||||| || | || ||||| |||||||| ||||||||||| || || Sbjct 21424 CTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTC 21483 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| |||| | ||| | |||||||| || |||||||| || || ||||||| || Sbjct 21484 CTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAA 21543 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 ||| || || ||| || ||||| | ||| || || | | || ||| | | | Sbjct 21544 TGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCG-CTTG--CCTCATGTACTC 21600 Query 65247 TTTGCGTAATAGACCCACTACCGAAA----CTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 || | || || || ||| || | |||| || ||| || || || | Sbjct 21601 CAAGC-TGATCAACAAGCTGCCGGAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGG 21659 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCC-ATGTAATCTCATCGGTATGAACTCT 65361 ||||||| | | |||| | ||| | ||||| || | | | |||||||||||||| Sbjct 21660 TGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGT-TGATCGGTATGAACTCG 21718 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GT 65420 | | |||| | | ||||| |||| ||| | || || || || || | |||| || Sbjct 21719 GGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGT 21777 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | ||||| ||||| || || |||| ||||| | || || | || Sbjct 21778 GTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 21837 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||||| |||||||| || || || || Sbjct 21838 CAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 21873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529353923360