Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1202 134 4e-26 seq193 105 2e-17 seq415 84.2 6e-11 >seq1202 Length=11351 Score = 134 bits (148), Expect = 4e-26 Identities = 185/255 (73%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| ||||||||| | || || || ||||||||||| ||||| ||||| Sbjct 2494 CGGCGCTGAATGTAACCAGTTTCGGCCGTCTTAACTGCTGTATCAATAAGACCTTCACGA 2435 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 ||||||||||| |||||||| | ||| | || ||| | ||| || | ||| |||| Sbjct 2434 CCACCCATAGCGTGGAAGAAGAACTCCTGTGG-CGTCAAACCCTTAAGGTACGAGTTCTC 2376 Query 302712 AACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| |||||| | ||| || ||| |||| ||||| || | Sbjct 2375 CACGAAACCACGACTCTCGGGACCCAGATCATC---CTTCCCGTAGTGAGGCAGCGTGCG 2319 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 | | | || || ||||||||||| || ||||| |||||||| |||| || | ||| Sbjct 2318 ATGGTTGAAACCATACGGGATACGCTTACCTTCAACATTCTGCTGACCCACACAAGCAAT 2259 Query 302829 CATCTGCGAAATATT 302843 |||||||||||||| Sbjct 2258 AATCTGCGAAATATT 2244 >seq193 Length=42787 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| ||||||||||| || | || |||||||| |||||||| Sbjct 17830 CCGTGCGAGATCAGACAATCGCGCTCCATTTCTCCCATTCGCAGACCACCTTCGCGAGCA 17771 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 17770 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGTGAGCGCGAGTGGATC 17711 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 17710 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 17658 >seq415 Length=29729 Score = 84.2 bits (92), Expect = 6e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 16123 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 16182 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 || | || | |||||| | || |||||| || || |||| || ||||| |||||||| Sbjct 16183 GAGCACCAGGATGTGCGGGTTCAGCCACATAGCGGCGCCCAGCACGACCTTCACCTTCTG 16242 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | | ||| ||| Sbjct 16243 ACCACCGGACAGACCACGCATACGCGAGTGGGTACCGAACTCGGCGCCCAGGCCGAAGCA 16302 Query 354183 GTCGAGATGTTTCTGTACG 354201 |||||| || ||||| ||| Sbjct 16303 GTCGAGGTGCTTCTGCACG 16321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471715825192789