Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1233 122 8e-23 seq312 84.2 2e-11 seq989 82.4 7e-11 >seq1233 Length=11135 Score = 122 bits (134), Expect = 8e-23 Identities = 336/508 (66%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| |||||||| || ||||| |||||||| | | ||| || || Sbjct 6943 AGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGC 6884 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||||| || || || |||| || | | | ||||| ||||||| ||| || Sbjct 6883 TTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATG 6824 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | || | | | ||||| |||| |||||| |||||| || |||| || ||| Sbjct 6823 ATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGT--TGT 6766 Query 139669 ACAT--TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTC 139725 ||| |||||||||| |||||| | | ||||| || | |||| | || | | || Sbjct 6765 GCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTG 6707 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| || || ||| |||||||||||| | | ||| ||||| ||||| || ||| Sbjct 6706 TCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGC 6647 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGAC 139845 || | ||||||||| || || || || ||||||||||||| | | | | Sbjct 6646 GGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTC 6587 Query 139846 ATCAATTCGTACGTTTCGATGGCGCTCACAATAT--CCCTTCCGTGGATACCGACAGAGA 139903 || | |||||||| |||| ||| | || | ||||| |||||| || | | | Sbjct 6586 ATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTT--GTGGATGCCCAGCGCCA 6529 Query 139904 CTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAAC 139963 | ||||| | ||| || || ||| || ||||| |||| | || || | Sbjct 6528 CGCGCATGATCATCTGCTGCGGCCGCTCCACCACCTTCCCCTGCACGCGGAAGAGGTAGC 6469 Query 139964 CGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || ||| || |||||| |||| ||||| Sbjct 6468 CGCGCTCGAGCGTCTTGAAGCCGAAGTA 6441 Score = 111 bits (122), Expect = 1e-19 Identities = 353/542 (65%), Gaps = 13/542 (2%) Strand=Plus/Minus Query 138471 CAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATAC 138530 || || ||||| || | ||||| || |||| | || | || |||||||| | || Sbjct 7955 CAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCAAGCAC 7896 Query 138531 TCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTG 138590 || ||| ||| ||||| ||| | ||||| | || || ||||| ||||| ||||| Sbjct 7895 ACGGCGATTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTG 7836 Query 138591 AGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTT 138650 ||| || | || || |||||| ||||||| ||| || ||||| | ||||| || Sbjct 7835 AGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGT---TT 7779 Query 138651 GATT-CGTTC--CTTGAGCGACGACCAGTCCCACAAATCGCT---AGGTTTTTTGTTCCA 138704 || ||||| ||| |||| | ||||| ||||| | | ||| | || ||| Sbjct 7778 AATCACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCCA 7719 Query 138705 CATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACC 138764 ||| ||| |||| || || ||| || || || || | | ||| ||||| || Sbjct 7718 CATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC 7659 Query 138765 AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAAT 138824 || ||| | || | ||| | || ||| | | | | ||||| || || ||| || Sbjct 7658 AAGCTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGAT 7599 Query 138825 CTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGC 138884 | | |||||| || |||| |||||||| ||| | | || ||||||| Sbjct 7598 GTTCATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTTCATCAGAATGAACGC 7539 Query 138885 GTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC 138944 ||||||||| || ||||| || | || || ||||| ||||||| || || ||| || Sbjct 7538 GTCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGA--CTTGCGC 7481 Query 138945 GGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || | || || ||||| ||||| || | ||||| | || || |||||| Sbjct 7480 GCCTCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACC 7421 Query 139003 TT 139004 || Sbjct 7420 TT 7419 >seq312 Length=34779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 24194 GATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 24253 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || || || ||||| || || || || || || || Sbjct 24254 GGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24313 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || ||||||||||| | | || || || || Sbjct 24314 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24373 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| |||| |||| ||||||| ||| Sbjct 24374 TATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24422 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 24423 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24482 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || || || ||||| || || || || || || || Sbjct 24483 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24542 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | || || || || Sbjct 24543 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24602 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| |||| |||| ||||||| ||| Sbjct 24603 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24650 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 24651 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24710 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || || || ||||| || || || || || || || Sbjct 24711 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24770 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | || || || || Sbjct 24771 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24830 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| |||| |||| ||||||| ||| Sbjct 24831 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24878 >seq989 Length=14097 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 1158 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 1217 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 1218 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1277 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 1278 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 1312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867248783160